Browse Element(s) Details


Os.2342.1.S1_at

Description gb:AK121211.1
DB_XREF= gi:37990834
TID=Os.2342.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2342 (NCBI UniGene Cluster)
UG_TITLE=Putative cycloartenol synthase (CAS1) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089G09, full insert sequence.
FL= gb:AK121211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0471010/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04680OsAffx.11893.1.S1_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04680OsAffx.11893.1.S1_s_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04690Os.17826.1.A1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_x_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690OsAffx.29895.1.S1_at1/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04700Os.50456.1.A1_a_at11/112+2124896..2128690Aspartyl-tRNA synthetase, putative, expressed
LOC_Os02g04710Os.2342.1.S1_at10/112+2128415..2137095Cycloartenol synthase, putative, expressed
LOC_Os02g04720NANA2+2140691..2141328hypothetical protein
LOC_Os02g04730Os.20295.1.S1_at10/112+2148478..2153358Cycloartenol synthase, putative, expressed
LOC_Os02g04740NANA2+2160311..2160892molybdopterin converting factor, subunit 2 family protein, expressed
LOC_Os02g04750Os.49446.1.S1_at11/112+2161770..2166648Cycloartenol synthase, putative, expressed
LOC_Os02g04750Os.27061.2.A1_x_at1/112+2161770..2166648Cycloartenol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2342.1.S1_at--890--2331Chr02:2130259..2130283 (25 bp)
AAAGAGCTTCCTTCTGGAGGCTGGG
LOC_Os02g04710
Os.2342.1.S1_at--80--5571Chr02:2130232..2130256 (25 bp)
GAAAGCTATTTGTCATCCCAAGATC
LOC_Os02g04710
Os.2342.1.S1_at--740--5411Chr02:2129499..2129523 (25 bp)
GAAGCGACCTCATGCGGTGAACACT
LOC_Os02g04710
Os.2342.1.S1_at--397--7771Chr02:2129484..2129508 (25 bp)
GGTGAACACTGGTTGGGCCATGCTA
LOC_Os02g04710
Os.2342.1.S1_at--437--4431Chr02:2129468..2129492 (25 bp)
GCCATGCTAGCCCTAATCGATGCAG
LOC_Os02g04710
Os.2342.1.S1_at--1007--8331Chr02:2129341..2129365 (25 bp)
GGCTGAGAGAGATCCAATTCCTTTG
LOC_Os02g04710
Os.2342.1.S1_at--269--7771NONE
GGTGAATTTCCCCAGCAAGAGATCA
NONE
Os.2342.1.S1_at--870--2411Chr02:2128730..2128754 (25 bp)
AAAACTGCATGATCAGCTACTCCGA
LOC_Os02g04710
Os.2342.1.S1_at--817--4511Chr02:2128650..2128674 (25 bp)
GCCGCAGACAAGTAGTTCAGCACGA
LOC_Os02g04710
Os.2342.1.S1_at--22--751Chr02:2128544..2128568 (25 bp)
ATGTATTCTCCCGTTAGTGATGCCA
LOC_Os02g04710
Os.2342.1.S1_at--538--6751Chr02:2128446..2128470 (25 bp)
GTTCAGATAGAATTCTTGCCACGCA
LOC_Os02g04710
Target Sequence 
AAAGAGCTTCCTTCTGGAGGCTGGGGAGAAAGCTATTTGTCATCCCAAGATCAGGTTTATACCAATCTCGAAGGGAAGCG
ACCTCATGCGGTGAACACTGGTTGGGCCATGCTAGCCCTAATCGATGCAGGGCAGGCTGAGAGAGATCCAATTCCTTTGC
ATCGAGCAGCGAAGGTTTTGATCAACTTACAATCGGAAGATGGTGAATTTCCCCAGCAAGAGATCATTGGAGTCTTCAAC
AAAAACTGCATGATCAGCTACTCCGAGTATAGAAACATNTTCCCTATTTGGGCCCTTGGGGAGTACCGTCGCCGCGTCTT
GGCCGCAGACAAGTAGTTCAGCACGAGCAGAGCAGCAGCACCAACAATGTGCATGTATTTATACGTGAAATAATGTAGCT
ATGTTTCAGTTGTAATAATGTGGCTATATGTATTCTCCCGTTAGTGATGCCACGCGAGCGTAGTCAAATAGAAACGCATT
TTGACACAAGTTCGAGATGAATGGATTCCTGAATCGAATGTTTGTGTTCAGATAGAATTCTTGCCACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis