Browse Element(s) Details


Os.49446.1.S1_at

Description gb:AK106822.1
DB_XREF= gi:32992031
TID=Os.49446.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E04, full insert sequence.
FL= gb:AK106822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0475011/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04710Os.2342.1.S1_at10/112+2128415..2137095Cycloartenol synthase, putative, expressed
LOC_Os02g04720NANA2+2140691..2141328hypothetical protein
LOC_Os02g04730Os.20295.1.S1_at10/112+2148478..2153358Cycloartenol synthase, putative, expressed
LOC_Os02g04740NANA2+2160311..2160892molybdopterin converting factor, subunit 2 family protein, expressed
LOC_Os02g04750Os.49446.1.S1_at11/112+2161770..2166648Cycloartenol synthase, putative, expressed
LOC_Os02g04750Os.27061.2.A1_x_at1/112+2161770..2166648Cycloartenol synthase, putative, expressed
LOC_Os02g04760Os.27060.1.A1_at11/112+2174423..2178634Cycloartenol synthase, putative
LOC_Os02g04770OsAffx.2508.1.S1_at9/112+2180598..2182741hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49446.1.S1_at--76--1211Chr02:2162028..2162052 (25 bp)
AGTATTGTAATCGTCTTCGCTCAGA
LOC_Os02g04750
Os.49446.1.S1_at--946--9571Chr02:2162015..2162039 (25 bp)
TCTTCGCTCAGAGAGGCGTGCATGA
LOC_Os02g04750
Os.49446.1.S1_at--363--951Chr02:2161981..2162005 (25 bp)
AGGAAACTCTTATACATGCTGCAGA
LOC_Os02g04750
Os.49446.1.S1_at--1054--3511Chr02:2161967..2161991 (25 bp)
CATGCTGCAGATATATTGATCGCCC
LOC_Os02g04750
Os.49446.1.S1_at--505--10751Chr02:2161952..2161976 (25 bp)
TTGATCGCCCTGTACAAATATTACT
LOC_Os02g04750
Os.49446.1.S1_at--529--2191Chr02:2161939..2161963 (25 bp)
ACAAATATTACTCGGCTATACCTAA
LOC_Os02g04750
Os.49446.1.S1_at--413--2451Chr02:2161904..2161928 (25 bp)
AAAATCTTCTAGCTCCGTTGCATAT
LOC_Os02g04750
Os.49446.1.S1_at--461--1591Chr02:2161894..2161918 (25 bp)
AGCTCCGTTGCATATCTCGGATGTA
LOC_Os02g04750
Os.49446.1.S1_at--181--471Chr02:2161881..2161905 (25 bp)
ATCTCGGATGTAATTGCTTGCGATC
LOC_Os02g04750
Os.49446.1.S1_at--970--7071Chr02:2161831..2161855 (25 bp)
GTCAAGACTGGTTATCGTAAATTCA
LOC_Os02g04750
Os.49446.1.S1_at--1128--331Chr02:2161807..2161831 (25 bp)
ATAACCCATTGGCTTTTGAGGCTTA
LOC_Os02g04750
Target Sequence 
AGTATTGTAATCGTCTTCGCTCAGAGAGGCGTGCATGAGAACATGGCAGGAAACTCTTATACATGCTGCAGATATATTGA
TCGCCCTGTACAAATATTACTCGGCTATACCTAAAAAAACAAGCAAAATCTTCTAGCTCCGTTGCATATCTCGGATGTAA
TTGCTTGCGATCCAATTTGATGTTGTATATATATATTGTCAAGACTGGTTATCGTAAATTCATAACCCATTGGCTTTTGA
GGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis