Browse Element(s) Details


Os.27060.1.A1_at

Description gb:CB636086
DB_XREF= gi:29631077
DB_XREF=OSJNEa01C23.r
CLONE=OSJNEa01C23
TID=Os.27060.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27060 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:A49398 (A.thaliana) A49398 cycloartenol synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0476011/11Cycloartenol synthase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04730Os.20295.1.S1_at10/112+2148478..2153358Cycloartenol synthase, putative, expressed
LOC_Os02g04740NANA2+2160311..2160892molybdopterin converting factor, subunit 2 family protein, expressed
LOC_Os02g04750Os.49446.1.S1_at11/112+2161770..2166648Cycloartenol synthase, putative, expressed
LOC_Os02g04750Os.27061.2.A1_x_at1/112+2161770..2166648Cycloartenol synthase, putative, expressed
LOC_Os02g04760Os.27060.1.A1_at11/112+2174423..2178634Cycloartenol synthase, putative
LOC_Os02g04770OsAffx.2508.1.S1_at9/112+2180598..2182741hypothetical protein
LOC_Os02g04780Os.1316.1.S2_at9/112+2192210..2193799expressed protein
LOC_Os02g04790NANA2+2201294..2202337hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27060.1.A1_at--1062--7031Chr02:2175985..2176009 (25 bp)
GTAACACGTAAGGATGCGAGGCTTG
LOC_Os02g04760
Os.27060.1.A1_at--872--4911Chr02:2175965..2175989 (25 bp)
GCTTGTGCGGCTTGTGTCGTCGTCC
LOC_Os02g04760
Os.27060.1.A1_at--519--3972Chr11:14714355..14714439 (24 bp)
CGGTCATCGTCGTGCTGCCGAAGAG
NONE
Os.27060.1.A1_at--77--3832Chr11:26368166..26368189 (24 bp)
CTGCCGAAGAGCGATGGAGCCGCCA
NONE
Os.27060.1.A1_at--1079--4211Chr02:2175869..2175893 (25 bp)
CCGCGGCTTGTATCGTCGTCGTGGT
LOC_Os02g04760
Os.27060.1.A1_at--53--4232Chr11:26367938..26367961 (24 bp)
CCGCTGTTCGCTAGCTTGGGAGGAT
NONE
Os.27060.1.A1_at--399--3411Chr02:2175703..2175727 (25 bp)
CAGCAGCAGCCTTTGGTATATAAGT
LOC_Os02g04760
Os.27060.1.A1_at--420--10731Chr02:2175661..2175685 (25 bp)
TTGAGGATTTTTACCATGAACATTG
LOC_Os02g04760
Os.27060.1.A1_at--822--10673Chr11:26367783..26367807 (25 bp)
TTGCCGAAATTTTTGACCGGAGCTC
NONE
Os.27060.1.A1_at--1059--8071Chr02:2175616..2175640 (25 bp)
GGAGCTCATGTTTATCAGGACCCAC
LOC_Os02g04760
Os.27060.1.A1_at--226--3351Chr02:2175601..2175625 (25 bp)
CAGGACCCACCAATAGACCCGAAAT
LOC_Os02g04760
Target Sequence 
GTAACACGTAAGGATGCGAGGCTTGTGCGGCTTGTGTCGTCGTCCGGTCATCGTCGTGCTGCCGAAGAGCGATGGAGCCG
CCAGCGGCAACTNTAGCCAAACGGAGGATGCGAGGCCCGCGGCTTGTATCGTCGTCGTGGTGCCGAAGAGCCACGGAGAC
GCCGCCGGCCACTCCAACCAACCCGCCGCCTCCGGTTCCGGCCACCGCCGCGGCCGCTGTTCGCTAGCTTGGGAGGATGG
CGACCTGCTGCCTGCTGGGCGAGCTGTCGGAGGATAGCGAAGCAGCAGCAGCCTTTGGTATATAAGTGAGGAGGGGATAG
GAAATTGAGGATTTTTACCATGAACATTGTTTTGCCGAAATTTTTGACCGGAGCTCATGTTTATCAGGACCCACCAATAG
ACCCGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27060.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis