Browse Element(s) Details


OsAffx.2508.1.S1_at

Description tigr:9630.m00392
TID=OsAffx.2508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g047709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04740NANA2+2160311..2160892molybdopterin converting factor, subunit 2 family protein, expressed
LOC_Os02g04750Os.49446.1.S1_at11/112+2161770..2166648Cycloartenol synthase, putative, expressed
LOC_Os02g04750Os.27061.2.A1_x_at1/112+2161770..2166648Cycloartenol synthase, putative, expressed
LOC_Os02g04760Os.27060.1.A1_at11/112+2174423..2178634Cycloartenol synthase, putative
LOC_Os02g04770OsAffx.2508.1.S1_at9/112+2180598..2182741hypothetical protein
LOC_Os02g04780Os.1316.1.S2_at9/112+2192210..2193799expressed protein
LOC_Os02g04790NANA2+2201294..2202337hypothetical protein
LOC_Os02g04800Os.48919.1.S1_at10/112+2205767..2207509avirulence-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2508.1.S1_at--122--4411NONE
GCCACGCTCGCGGACAGATGTTTTT
NONE
OsAffx.2508.1.S1_at--741--1831NONE
ACGCTCGCGGACAGATGTTTTTTCT
NONE
OsAffx.2508.1.S1_at--603--3951Chr02:2182583..2182602 (20 bp)
CGGACAGATGTTTTTTCTCCAACTC
LOC_Os02g04770
OsAffx.2508.1.S1_at--226--1272Chr02:2182583..2182607 (25 bp)
AGATGTTTTTTCTCCAACTCTGACA
LOC_Os02g04770
OsAffx.2508.1.S1_at--895--10351Chr02:2182588..2182612 (25 bp)
TTTTTTCTCCAACTCTGACATCCTC
LOC_Os02g04770
OsAffx.2508.1.S1_at--247--9251Chr02:2182611..2182635 (25 bp)
TCCTTTTCTTCTTCAATGCCGGTGA
LOC_Os02g04770
OsAffx.2508.1.S1_at--192--10331Chr02:2182615..2182639 (25 bp)
TTTCTTCTTCAATGCCGGTGACAAC
LOC_Os02g04770
OsAffx.2508.1.S1_at--527--9551Chr02:2182620..2182644 (25 bp)
TCTTCAATGCCGGTGACAACCCAAA
LOC_Os02g04770
OsAffx.2508.1.S1_at--271--7371Chr02:2182632..2182656 (25 bp)
GTGACAACCCAAACTCTAGCGAAGA
LOC_Os02g04770
OsAffx.2508.1.S1_at--334--1811Chr02:2182638..2182662 (25 bp)
ACCCAAACTCTAGCGAAGAGCCAAT
LOC_Os02g04770
OsAffx.2508.1.S1_at--883--5831Chr02:2182655..2182679 (25 bp)
GAGCCAATAAATGAGGGTCCCGGGT
LOC_Os02g04770
Target Sequence 
GCCACGCTCGCGGACAGATGTTTTTTCTCCAACTCTGACATCCTCCTTTTCTTCTTCAATGCCGGTGACAACCCAAACTC
TAGCGAAGAGCCAATAAATGAGGGTCCCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis