Browse Element(s) Details


Os.48919.1.S1_at

Description gb:AK121058.1
DB_XREF= gi:37990681
TID=Os.48919.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056J21, full insert sequence.
FL= gb:AK121058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0480010/11avirulence-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04770OsAffx.2508.1.S1_at9/112+2180598..2182741hypothetical protein
LOC_Os02g04780Os.1316.1.S2_at9/112+2192210..2193799expressed protein
LOC_Os02g04790NANA2+2201294..2202337hypothetical protein
LOC_Os02g04800Os.48919.1.S1_at10/112+2205767..2207509avirulence-responsive protein, putative, expressed
LOC_Os02g04810OsAffx.2509.1.S1_at11/112+2208480..2214641B3 DNA binding domain containing protein, expressed
LOC_Os02g04820NANA2+2222760..2224908retrotransposon, putative, centromere-specific
LOC_Os02g04830NANA2+2226405..2227106retrotransposon, putative, centromere-specific
LOC_Os02g04840Os.18948.1.S1_at11/112+2230686..2239226Arabinose kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48919.1.S1_at--870--1711Chr02:2206031..2206051 (21 bp)
ACCACCAGAGGTTCAGCATCAAGGG
LOC_Os02g04800
Os.48919.1.S1_at--675--5311NONE
GAAGGTTTTCAAGGGCATCACTGAC
NONE
Os.48919.1.S1_at--630--5651Chr02:2206282..2206306 (25 bp)
GACAGGGAGCTCAATGTGCTGGATA
LOC_Os02g04800
Os.48919.1.S1_at--250--6051Chr02:2206342..2206567 (25 bp)
GAGATATCACTAACTGACACATCGG
LOC_Os02g04800
Os.48919.1.S1_at--548--5631Chr02:2206558..2206582 (25 bp)
GACACATCGGAGAAATTGCTTGCTT
LOC_Os02g04800
Os.48919.1.S1_at--936--6291Chr02:2206606..2206630 (25 bp)
GATGATCCTGACCTCTATGGTGAAT
LOC_Os02g04800
Os.48919.1.S1_at--657--6191Chr02:2207260..2207284 (25 bp)
GAGGAACTGGAACAGCTCGAACCAA
LOC_Os02g04800
Os.48919.1.S1_at--81--5391Chr02:2207278..2207302 (25 bp)
GAACCAAAGACCGAGACCTGAAGCT
LOC_Os02g04800
Os.48919.1.S1_at--1041--1571Chr02:2207299..2207323 (25 bp)
AGCTCAACACTCATTCGTCCAGAAG
LOC_Os02g04800
Os.48919.1.S1_at--67--831Chr02:2207360..2207384 (25 bp)
ATGGTTCTCCTCTTGTTTGTAAATA
LOC_Os02g04800
Os.48919.1.S1_at--753--2131Chr02:2207413..2207437 (25 bp)
ACAGTTACAGAATTCGCAGTGGTTT
LOC_Os02g04800
Target Sequence 
ACCACCAGAGGTTCAGCATCAAGGGGCGCGTTTACCCGGCGATTCTTCCCGTCGACGGCAAGGAGGTCTCAGGGAAGGTT
TTCAAGGGCATCACTGACAGGGAGCTCAATGTGCTGGATATATTTGAAGATGAGGAGTATGTCAAGAGAACCGTTGAGAT
ATCACTAACTGACACATCGGAGAAATTGCTTGCTTATGCATACATTTGGGGCAATCAGGATGATCCTGACCTCTATGGTG
AATGGGACTTTGAGGAATGGAAAAGGGTGCACTTGGAGGATTATGTCAAGATGACACAAGAGTTCATGGAGGAACTGGAA
CAGCTCGAACCAAAGACCGAGACCTGAAGCTCAACACTCATTCGTCCAGAAGGATTCACTCAACAATGAATTGTATGTGC
ATTGTCAAATGGTTCTCCTCTTGTTTGTAAATAAGATGTTTACACCATTAATTGATAGACAACAGTTACAGAATTCGCAG
TGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis