Browse Element(s) Details


OsAffx.2509.1.S1_at

Description tigr:9630.m00396
TID=OsAffx.2509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to auxin response factor 7a
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0481011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04780Os.1316.1.S2_at9/112+2192210..2193799expressed protein
LOC_Os02g04790NANA2+2201294..2202337hypothetical protein
LOC_Os02g04800Os.48919.1.S1_at10/112+2205767..2207509avirulence-responsive protein, putative, expressed
LOC_Os02g04810OsAffx.2509.1.S1_at11/112+2208480..2214641B3 DNA binding domain containing protein, expressed
LOC_Os02g04820NANA2+2222760..2224908retrotransposon, putative, centromere-specific
LOC_Os02g04830NANA2+2226405..2227106retrotransposon, putative, centromere-specific
LOC_Os02g04840Os.18948.1.S1_at11/112+2230686..2239226Arabinose kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009785biological_processblue light signaling pathway
GO:0009908biological_processflower development
GO:0040008biological_processregulation of growth
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2509.1.S1_at--390--8131Chr02:2209152..2209176 (25 bp)
GGACTTGTGCATCAAGGTTTCCCCT
LOC_Os02g04810
OsAffx.2509.1.S1_at--456--2331Chr02:2209098..2209122 (25 bp)
AAAGATGCACTTCCTGATGTAGAAA
LOC_Os02g04810
OsAffx.2509.1.S1_at--870--2491Chr02:2209053..2209077 (25 bp)
AACAGTGGCTTGTTTGGGATCAACA
LOC_Os02g04810
OsAffx.2509.1.S1_at--506--2231Chr02:2208896..2208920 (25 bp)
AAATATCAACCTCCATGGTTTCCCA
LOC_Os02g04810
OsAffx.2509.1.S1_at--931--9311Chr02:2208876..2208900 (25 bp)
TCCCAGTCATTTGGTCAGTCGGATA
LOC_Os02g04810
OsAffx.2509.1.S1_at--740--9131Chr02:2208829..2208853 (25 bp)
TGCGATCAATGATGGTGCCTTCTTG
LOC_Os02g04810
OsAffx.2509.1.S1_at--551--10731Chr02:2208807..2208831 (25 bp)
TTGAACAAAAATTCCTGGCCCGCTG
LOC_Os02g04810
OsAffx.2509.1.S1_at--175--71Chr02:2208620..2208644 (25 bp)
ATTGACATCGGCAGGTACTCTGGAT
LOC_Os02g04810
OsAffx.2509.1.S1_at--737--6051Chr02:2208590..2208614 (25 bp)
GAGTTGAAGCATGCTTTGGCTCGCA
LOC_Os02g04810
OsAffx.2509.1.S1_at--17--4891Chr02:2208578..2208602 (25 bp)
GCTTTGGCTCGCATGTTTGGTATAG
LOC_Os02g04810
OsAffx.2509.1.S1_at--694--5531Chr02:2208519..2208543 (25 bp)
GAAACTGGTCTACAAGGATCACGAG
LOC_Os02g04810
Target Sequence 
GGACTTGTGCATCAAGGTTTCCCCTCTTCTAACTTCAATCAACACCAGATGTTCAAAGATGCACTTCCTGATGTAGAAAT
GGAAGGTGTGGATCCAAGTAACAGTGGCTTGTTTGGGATCAACAATGATAACCTGTTAGGATTCCCAATAGAAACAGAGG
ACTTGCTGATAAATGCACTTGATTCTGTCAAGTATCAGAATCACATATCAACTGATGTTGAAAACAACTACCCGATGCAA
AAGGATGCTCTGCAAGAAATATCAACCTCCATGGTTTCCCAGTCATTTGGTCAGTCGGATATGGCTTTTAATTCCATTGA
TTCTGCGATCAATGATGGTGCCTTCTTGAACAAAAATTCCTGGCCCGCTGCCCCTCTGCTGCAGAGAATGCGGACATTCA
CCAAGGTGTACAAACGAGGAGCTGTAGGCCGGTCTATTGACATCGGCAGGTACTCTGGATATGAAGAGTTGAAGCATGCT
TTGGCTCGCATGTTTGGTATAGAGGGTCAACTTGAAGATCGACAGAGAATAGGCTGGAAACTGGTCTACAAGGATCACGA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis