Browse Element(s) Details


OsAffx.11893.1.S1_at

Description tigr:9630.m00382
TID=OsAffx.11893.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to squamosa promoter binding protein homolog 10 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0468011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04650OsAffx.24099.1.S1_x_at11/112+2082561..2085271expressed protein
LOC_Os02g04650Os.6162.1.S1_at11/112+2082561..2085271expressed protein
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04670Os.5742.1.S2_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.5742.1.S1_a_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.56065.1.S1_s_at1/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04680OsAffx.11893.1.S1_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04680OsAffx.11893.1.S1_s_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04690Os.17826.1.A1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_x_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690OsAffx.29895.1.S1_at1/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04700Os.50456.1.A1_a_at11/112+2124896..2128690Aspartyl-tRNA synthetase, putative, expressed
LOC_Os02g04710Os.2342.1.S1_at10/112+2128415..2137095Cycloartenol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11893.1.S1_at--898--5431Chr02:2107388..2107412 (25 bp)
GAACCTATTTTGAAGATGTCTGTGG
LOC_Os02g04680
OsAffx.11893.1.S1_at--223--5051Chr02:2107416..2107440 (25 bp)
GCAGAATGTCAAGAGTTCTCCATCT
LOC_Os02g04680
OsAffx.11893.1.S1_at--876--751Chr02:2107421..2107445 (25 bp)
ATGTCAAGAGTTCTCCATCTGGTGT
LOC_Os02g04680
OsAffx.11893.1.S1_at--650--3231Chr02:2107425..2107449 (25 bp)
CAAGAGTTCTCCATCTGGTGTGAGT
LOC_Os02g04680
OsAffx.11893.1.S1_at--1118--6711Chr02:2107430..2107454 (25 bp)
GTTCTCCATCTGGTGTGAGTGTGGC
LOC_Os02g04680
OsAffx.11893.1.S1_at--312--4111Chr02:2107862..2107886 (25 bp)
CGCAGACGGAAGCCACAACCAGAAG
LOC_Os02g04680
OsAffx.11893.1.S1_at--1070--3291Chr02:2107875..2107899 (25 bp)
CACAACCAGAAGCAATTTCCTTAAG
LOC_Os02g04680
OsAffx.11893.1.S1_at--821--911Chr02:2107907..2107931 (25 bp)
AGGCTCTCTACATTACTCTATGGTG
LOC_Os02g04680
OsAffx.11893.1.S1_at--750--4811Chr02:2107909..2107933 (25 bp)
GCTCTCTACATTACTCTATGGTGGT
LOC_Os02g04680
OsAffx.11893.1.S1_at--560--3731Chr02:2107914..2107938 (25 bp)
CTACATTACTCTATGGTGGTATTAA
LOC_Os02g04680
OsAffx.11893.1.S1_at--871--7731Chr02:2107928..2107952 (25 bp)
GGTGGTATTAAGATTCTATTTGCAT
LOC_Os02g04680
Target Sequence 
GAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCT
GGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCT
CTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTC
TTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGG
CGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATT
ACTCTATGGTGGTATTAAGATTCTATTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis