Browse Element(s) Details


OsAffx.4369.1.S1_at

Description tigr:9633.m01665
TID=OsAffx.4369.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g046601/11Protein arginine N-methyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04610Os.53281.1.S1_s_at11/112+2064263..2065735expressed protein
LOC_Os02g04610Os.53281.1.S1_at11/112+2064263..2065735expressed protein
LOC_Os02g04620OsAffx.2507.1.S1_at11/112+2065874..2066200hypothetical protein
LOC_Os02g04630OsAffx.11891.1.S1_at11/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04630Os.5811.1.S1_at1/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04640Os.52219.1.A1_at11/112+2075496..2079149myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g04650OsAffx.24099.1.S1_x_at11/112+2082561..2085271expressed protein
LOC_Os02g04650Os.6162.1.S1_at11/112+2082561..2085271expressed protein
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04670Os.5742.1.S2_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.5742.1.S1_a_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.56065.1.S1_s_at1/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04680OsAffx.11893.1.S1_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04680OsAffx.11893.1.S1_s_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04690Os.17826.1.A1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_x_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690OsAffx.29895.1.S1_at1/112+2110921..2120419Cycloartenol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008276molecular_functionprotein methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4369.1.S1_at--218--3072Chr05:10737727..10737751 (25 bp)
AATCATCTACTGTACCTTTTCTCTC
NONE
OsAffx.4369.1.S1_at--70--10591Chr05:10737745..10737769 (25 bp)
TTCTCTCCATGATGTAGCTTACCTT
NONE
OsAffx.4369.1.S1_at--525--5651Chr05:10737966..10737990 (25 bp)
GACATCCCAGGATTTGGCTACTGTA
NONE
OsAffx.4369.1.S1_at--618--4851Chr05:10737982..10738006 (25 bp)
GCTACTGTATCAGCCATCTCAGGTA
NONE
OsAffx.4369.1.S1_at--842--10471Chr05:10738252..10738276 (25 bp)
TTACTGTTTATCCTTTCATTGCCAA
NONE
OsAffx.4369.1.S1_at--998--1631Chr05:10738693..10738717 (25 bp)
AGCGTATCCCTACATGCACAACTTA
NONE
OsAffx.4369.1.S1_at--459--9011Chr05:10738707..10738731 (25 bp)
TGCACAACTTACACGGGCTAGAGCT
NONE
OsAffx.4369.1.S1_at--626--111Chr05:10738771..10738885 (25 bp)
ATTCTCGGCTACAATTACTACTGCA
NONE
OsAffx.4369.1.S1_at--709--2151Chr05:10738904..10739193 (25 bp)
ACAGCAGTGGTTTTCATGGTCTCAA
NONE
OsAffx.4369.1.S1_at--696--5091Chr05:10739196..10739220 (25 bp)
GCACGTGACAGGGTTGTTCTTACCA
NONE
OsAffx.4369.1.S1_at--879--7711Chr05:10739328..10739352 (25 bp)
GGTGGCCAGATCCTATTTCTAGTGA
NONE
Target Sequence 
AATCATCTACTGTACCTTTTCTCTCCATGATGTAGCTTACCTTGAGACATTTTCATTCTGGGCTGTGAGCAAAAGAAAAT
TTCGTGGTCTGAATTTGACATCCCAGGATTTGGCTACTGTATCAGCCATCTCAGGTATTGGTGTTCTGGTATATCAATTT
ACTGTTTATCCTTTCATTGCCAAATATTTTGGACCAATCAGACCATTACGTCCTACCGCGATCTTATCCGTGCTTCTCCT
CACAGCGTATCCCTACATGCACAACTTACACGGGCTAGAGCTCAAAGTACTAATCAACATAGCTTCAATTTTGAAAAATG
TATTCTCGGCTACAATTACTACTGCATGCAACATTCTACAAAATACAGCAGTGGTTTTCATGGTCTCAAAAGCACGTGAC
AGGGTTGTTCTTACCAGGTATACAAATAAACAACACATATGCAGCCTTATCAATATGGTGGCAGGTGGCCAGATCCTATT
TCTAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis