Browse Element(s) Details


Os.5811.1.S1_at

Description gb:AK066915.1
DB_XREF= gi:32976933
TID=Os.5811.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090C23, full insert sequence.
FL= gb:AK066915.1 gb:AK061334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0370011/11pentatricopeptide, putative, expressed
LOC_Os02g046301/11Sodium/calcium exchanger protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03660OsAffx.31566.2.S1_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.2.S1_x_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.1.S1_at4/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.18656.1.S1_at2/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03670Os.50555.1.S1_at7/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03670Os.50555.1.S2_at5/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03680OsAffx.31567.1.S1_at7/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03680OsAffx.28520.1.S1_at1/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03690OsAffx.31567.1.S1_at11/1112+1490359..1492845D-mannose binding lectin family protein
LOC_Os12g03700Os.5811.1.S1_at11/1112+1493521..1494560pentatricopeptide, putative, expressed
LOC_Os12g03710Os.22510.1.A1_at2/1112+1497460..1498353heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os12g03720Os.18609.1.S1_at11/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03720Os.50822.1.S1_at5/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03730OsAffx.18657.1.S1_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03730Os.24473.1.A1_s_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03740OsAffx.19473.1.S1_s_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03740OsAffx.19473.1.S1_at11/1112+1513488..1518353F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006793biological_processphosphorus metabolism
GO:0006812biological_processcation transport
GO:0006816biological_processcalcium ion transport
GO:0006874biological_processcalcium ion homeostasis
GO:0006882biological_processzinc ion homeostasis
GO:0030001biological_processmetal ion transport
GO:0030026biological_processmanganese ion homeostasis
GO:0051592biological_processresponse to calcium ion
GO:0005774cellular_componentvacuolar membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0012505cellular_componentendomembrane system
GO:0015368molecular_functioncalcium:cation antiporter activity
GO:0015369molecular_functioncalcium:hydrogen antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5811.1.S1_at--321--91Chr12:1493958..1493982 (25 bp)
GTTCGTCCAAAACTCGCCCGTTCAT
LOC_Os12g03700
Os.5811.1.S1_at--78--2431Chr12:1493950..1493974 (25 bp)
AAAACTCGCCCGTTCATCTCTACGG
LOC_Os12g03700
Os.5811.1.S1_at--811--4031Chr12:1493940..1493964 (25 bp)
CGTTCATCTCTACGGCGCGTGTGGC
LOC_Os12g03700
Os.5811.1.S1_at--755--9511Chr12:1493932..1493956 (25 bp)
TCTACGGCGCGTGTGGCCTGTTCGA
LOC_Os12g03700
Os.5811.1.S1_at--82--3031Chr12:1493883..1493907 (25 bp)
AATGCCGGTGCATGGGCAGAACCTC
LOC_Os12g03700
Os.5811.1.S1_at--109--811Chr12:1493872..1493896 (25 bp)
ATGGGCAGAACCTCGTCTCGTGGAA
LOC_Os12g03700
Os.5811.1.S1_at--1004--3891Chr12:1493780..1493804 (25 bp)
CTGGGCGTCAACTTTGCGCCAGATG
LOC_Os12g03700
Os.5811.1.S1_at--350--7411Chr12:1493666..1493690 (25 bp)
GTGTTGGTGGACAATTCGCATGTGA
LOC_Os12g03700
Os.5811.1.S1_at--725--1871Chr12:1493599..1493623 (25 bp)
ACGATGCAAGGCTGATATGACTTCA
LOC_Os12g03700
Os.5811.1.S1_at--86--274Chr06:11513077..11513098 (22 bp)
ATATGACTTCATATGATTGTGTAAA
NONE
Os.5811.1.S1_at--700--2252Chr06:11513122..11513143 (22 bp)
AAATTTTTGCTCAATTTCTGTCAAA
NONE
Target Sequence 
GTTCGTCCAAAACTCGCCCGTTCATCTCTACGGCGCGTGTGGCCTGTTCGAGAGCGTGCACAAGGTGTTCGATGAAATGC
CGGTGCATGGGCAGAACCTCGTCTCGTGGAATTCGATGCTCAACAGCTTTGCGGCCAACGGGCGCCCTAACGAGGTTCTC
ACTGTCTTCCGGGAGATGCTGGGCGTCAACTTTGCGCCAGATGGAGTCACCATAGTCAGTGTTCTAACCGCTTGTGCAGA
GATTGGGGCGCTTGCTCTTGGGAGGAGGGTTCATGTGTATGCGGAAAAGGTTGTGTTGGTGGACAATTCGCATGTGAGCA
ATGCCCTGATTAATCTGTATGCCAAGTGTGGTATTGTCAACGATGCAAGGCTGATATGACTTCATATGATTGTGTAAAAT
GTTGTTGAAATTTTGNCAAAATTTTTGCTCAATTTCTGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis