Browse Element(s) Details


Os.6162.1.S1_at

Description gb:AK065722.1
DB_XREF= gi:32975740
TID=Os.6162.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038J22, full insert sequence.
FL= gb:AK065722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0465011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04600Os.9332.2.S1_x_at1/112+2059024..2060523transposon protein, putative, unclassified
LOC_Os02g04610Os.53281.1.S1_s_at11/112+2064263..2065735expressed protein
LOC_Os02g04610Os.53281.1.S1_at11/112+2064263..2065735expressed protein
LOC_Os02g04620OsAffx.2507.1.S1_at11/112+2065874..2066200hypothetical protein
LOC_Os02g04630OsAffx.11891.1.S1_at11/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04630Os.5811.1.S1_at1/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04640Os.52219.1.A1_at11/112+2075496..2079149myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g04650OsAffx.24099.1.S1_x_at11/112+2082561..2085271expressed protein
LOC_Os02g04650Os.6162.1.S1_at11/112+2082561..2085271expressed protein
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04670Os.5742.1.S2_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.5742.1.S1_a_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.56065.1.S1_s_at1/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04680OsAffx.11893.1.S1_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04680OsAffx.11893.1.S1_s_at11/112+2106371..2110538SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6162.1.S1_at--238--1351Chr02:2082805..2082829 (25 bp)
AGAGCTCAAGGATAGGTAACAGAAA
LOC_Os02g04650
Os.6162.1.S1_at--753--5511Chr02:2082784..2082808 (25 bp)
GAAAATGCCATCAAACCGGCAGCAT
LOC_Os02g04650
Os.6162.1.S1_at--19--3751Chr02:2082739..2082763 (25 bp)
CTGCTTTCCCAATATTAGCGTCGAA
LOC_Os02g04650
Os.6162.1.S1_at--430--7211Chr02:2082720..2082744 (25 bp)
GTCGAATCATGTAACGTTGTAACGG
LOC_Os02g04650
Os.6162.1.S1_at--505--8731Chr02:2082703..2082727 (25 bp)
TGTAACGGCAGCAGAATGATCATCT
LOC_Os02g04650
Os.6162.1.S1_at--562--3551Chr02:2082683..2082707 (25 bp)
CATCTGAGTTTGATATTCATGCCTT
LOC_Os02g04650
Os.6162.1.S1_at--221--131Chr02:2082669..2082693 (25 bp)
ATTCATGCCTTGTTAGATCACTTAA
LOC_Os02g04650
Os.6162.1.S1_at--675--5731Chr02:2082604..2082628 (25 bp)
GACTGTATGTTGTAGACACTTTGTT
LOC_Os02g04650
Os.6162.1.S1_at--227--5471Chr02:2082590..2082614 (25 bp)
GACACTTTGTTGTAAACTCCGGTCG
LOC_Os02g04650
Os.6162.1.S1_at--1138--8731Chr02:2082580..2082604 (25 bp)
TGTAAACTCCGGTCGTCCAGATGAA
LOC_Os02g04650
Os.6162.1.S1_at--768--1991Chr02:2082575..2082599 (25 bp)
ACTCCGGTCGTCCAGATGAATATGA
LOC_Os02g04650
Target Sequence 
AGAGCTCAAGGATAGGTAACAGAAAATGCCATCAAACCGGCAGCATCAGCAAGGCAAGTAANTGCCCTGCTTTCCCAATA
TTAGCGTCGAATCATGTAACGTTGTAACGGCAGCAGAATGATCATCTGAGTTTGATATTCATGCCTTGTTAGATCACTTA
AGGTCCCATATTTTTCGCAATATCCGATCGCATGTAACTGCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCG
TCCAGATGAATATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis