Browse Element(s) Details


OsAffx.11889.1.S1_x_at

Description tigr:9630.m00372
TID=OsAffx.11889.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0459010/11Auxin-independent growth promoter, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04550OsAffx.2505.1.S1_at10/112+2036222..2036524expressed protein
LOC_Os02g04560Os.51216.1.S1_a_at11/112+2037530..2040432RNA recognition motif family protein, expressed
LOC_Os02g04570OsAffx.2506.1.S1_at11/112+2041370..2044121hypothetical protein
LOC_Os02g04580NANA2+2047914..2048255retrotransposon protein, putative, unclassified
LOC_Os02g04590OsAffx.11889.1.S1_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04590OsAffx.11889.1.S1_x_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04600Os.9332.2.S1_x_at1/112+2059024..2060523transposon protein, putative, unclassified
LOC_Os02g04610Os.53281.1.S1_s_at11/112+2064263..2065735expressed protein
LOC_Os02g04610Os.53281.1.S1_at11/112+2064263..2065735expressed protein
LOC_Os02g04620OsAffx.2507.1.S1_at11/112+2065874..2066200hypothetical protein
LOC_Os02g04630OsAffx.11891.1.S1_at11/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04630Os.5811.1.S1_at1/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04640Os.52219.1.A1_at11/112+2075496..2079149myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11889.1.S1_x_at--779--2331Chr02:2055170..2055194 (25 bp)
AAAGATGAGCTCTGCCCATTAACAA
LOC_Os02g04590
OsAffx.11889.1.S1_x_at--1101--2791Chr02:2055169..2055193 (25 bp)
AAGATGAGCTCTGCCCATTAACAAT
LOC_Os02g04590
OsAffx.11889.1.S1_x_at--322--691Chr02:2055166..2055190 (25 bp)
ATGAGCTCTGCCCATTAACAATGGA
LOC_Os02g04590
OsAffx.11889.1.S1_x_at--122--4331Chr02:2055155..2055179 (25 bp)
CCATTAACAATGGAGGAGGCTGCAA
LOC_Os02g04590
OsAffx.11889.1.S1_x_at--31--2751Chr02:2055057..2055081 (25 bp)
AAGAAGAATGGCTGCCCTTACCTCA
LOC_Os02g04590
OsAffx.11889.1.S1_x_at--157--6231Chr02:2053659..2053680 (22 bp)
GATGGCCCTGGGGTATCAAGCCCAA
LOC_Os02g04590
OsAffx.11889.1.S1_x_at--122--7691Chr02:2053649..2053673 (25 bp)
GGGTATCAAGCCCAAAGGGAGGAGG
LOC_Os02g04590
OsAffx.11889.1.S1_x_at--23--6171Chr02:2053628..2053652 (25 bp)
GAGGTTGCCCCGGTACCCATGTGGC
LOC_Os02g04590
OsAffx.11889.1.S1_x_at--1145--991Chr02:2053627..2053651 (25 bp)
AGGTTGCCCCGGTACCCATGTGGCA
LOC_Os02g04590
OsAffx.11889.1.S1_x_at--1061--6671Chr02:2053625..2053649 (25 bp)
GTTGCCCCGGTACCCATGTGGCACT
LOC_Os02g04590
OsAffx.11889.1.S1_x_at--184--7171NONE
GTCGGGCCCGAGAACAACAACAACA
NONE
Target Sequence 
AAAGATGAGCTCTGCCCATTAACAATGGAGGAGGCTGCAATGGTATTGAAGGCACTAGACATTGATAGGAGTTATCAAAT
ATACATTGCCGATGGTGAAATATACGGTGGCCAAAGAAGAATGGCTGCCCTTACCTCAGCTTATCCCAATGTGGTGAGAA
AAGAGACATTATTGCCTTCAGATATCTCAGGTTTTTTCCAGAACCATTCCTCCCAGATGGCCCTGGGGTATCAAGCCCAA
AGGGAGGAGGTTGCCCCGGTACCCATGTGGCACTCCCCCGAGGGGGGTCGGGCCCGAGAACAACAACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11889.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis