Browse Element(s) Details


OsAffx.2506.1.S1_at

Description tigr:9630.m00370
TID=OsAffx.2506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0457011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04530OsAffx.2504.1.S1_at11/112+2011707..2018122NB-ARC domain containing protein
LOC_Os02g04540OsAffx.28180.1.S1_s_at2/112+2021090..2023354retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g04550OsAffx.2505.1.S1_at10/112+2036222..2036524expressed protein
LOC_Os02g04560Os.51216.1.S1_a_at11/112+2037530..2040432RNA recognition motif family protein, expressed
LOC_Os02g04570OsAffx.2506.1.S1_at11/112+2041370..2044121hypothetical protein
LOC_Os02g04580NANA2+2047914..2048255retrotransposon protein, putative, unclassified
LOC_Os02g04590OsAffx.11889.1.S1_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04590OsAffx.11889.1.S1_x_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04600Os.9332.2.S1_x_at1/112+2059024..2060523transposon protein, putative, unclassified
LOC_Os02g04610Os.53281.1.S1_s_at11/112+2064263..2065735expressed protein
LOC_Os02g04610Os.53281.1.S1_at11/112+2064263..2065735expressed protein
LOC_Os02g04620OsAffx.2507.1.S1_at11/112+2065874..2066200hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2506.1.S1_at--57--8211Chr02:2042886..2042910 (25 bp)
GGAATGTCACCCTTGCAGATGATGA
LOC_Os02g04570
OsAffx.2506.1.S1_at--489--6551Chr02:2042936..2042960 (25 bp)
GATTATCAGTATATGTCCGTTGTGC
LOC_Os02g04570
OsAffx.2506.1.S1_at--337--6651Chr02:2042968..2042992 (25 bp)
GTTGATCATGTTATCTGTCGGACAA
LOC_Os02g04570
OsAffx.2506.1.S1_at--312--3191Chr02:2043004..2043028 (25 bp)
CAATATCCCTCCTGATTTTGGCAAA
LOC_Os02g04570
OsAffx.2506.1.S1_at--689--10271Chr02:2043071..2043095 (25 bp)
TTTCTGATAACCAACCATGCTTCGT
LOC_Os02g04570
OsAffx.2506.1.S1_at--611--631Chr02:2043087..2043111 (25 bp)
ATGCTTCGTTATTGCCCATGGCAAA
LOC_Os02g04570
OsAffx.2506.1.S1_at--227--10431Chr02:2043796..2043820 (25 bp)
TTATGGGCTATCTTGGCCGCAAAGA
LOC_Os02g04570
OsAffx.2506.1.S1_at--833--6911Chr02:2043857..2043881 (25 bp)
GTATGACACAGACTGGCTTCGCACA
LOC_Os02g04570
OsAffx.2506.1.S1_at--1035--2891Chr02:2043942..2043966 (25 bp)
AAGGAGTTTCTGCACTTAAATCGGA
LOC_Os02g04570
OsAffx.2506.1.S1_at--904--8212Chr07:26886951..26887101 (24 bp)
GGAATATCAGGTCCCATCCATATGA
NONE
OsAffx.2506.1.S1_at--622--7351Chr02:2044024..2044048 (25 bp)
GTGAATGGCCGGAACTGCTAGTTGA
LOC_Os02g04570
Target Sequence 
GGAATGTCACCCTTGCAGATGATGATTTCAGTTTTGATCGGATTAAATGTGATTATCAGTATATGTCCGTTGTGCTGGAA
GAGTTGATCATGTTATCTGTCGGACAAAATGGATTGTCCAATATCCCTCCTGATTTTGGCAAATACTTGGGTTTGCTTAA
AGGACTAGTCAAACCTGATGACGAATTTCTGATAACCAACCATGCTTCGTTATTGCCCATGGCAAACAGGACGGATGCAT
TTATGATGATGTACAATCATATTATGGGCTATCTTGGCCGCAAAGATCCTAAAAAGAAGATATACATTCTATCACACCTG
AAGTATGACACAGACTGGCTTCGCACAGCGTCAGGAAACAGTGAGATAGGGAAATGGCTTTGGCGCCGGAGATACGGCCA
GACTGTTAAGGAGTTTCTGCACTTAAATCGGAATATCAGGTCCCATCCATATGAACATTCCGAGGAAAAGATCGAAGAAG
CTCTATACGGTGAATGGCCGGAACTGCTAGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis