Browse Element(s) Details

OsAffx.28180.1.S1_s_at

Description

tigr:9634.m04780
TID=OsAffx.28180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161572 extensin-like protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49100	11/11	leucine-rich repeat family protein, putative, expressed
LOC_Os02g04540	2/11	retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49050	Os.53611.1.S1_at	11/11	6	+	29726337..29730922	hAT dimerisation domain-containing protein, putative, expressed
LOC_Os06g49060	Os.54378.1.S1_at	11/11	6	+	29732807..29736190	ternary complex factor MIP1, putative, expressed
LOC_Os06g49070	OsAffx.15991.1.S1_at	11/11	6	+	29736486..29737309	expressed protein
LOC_Os06g49080	Os.54886.1.S1_at	11/11	6	+	29737882..29741501	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090	Os.8048.1.S1_at	11/11	6	+	29743318..29749634	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090	Os.54886.1.S1_at	2/11	6	+	29743318..29749634	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49100	OsAffx.28180.1.S1_s_at	11/11	6	+	29753547..29755379	leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100	Os.54530.1.S1_x_at	11/11	6	+	29753547..29755379	leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100	Os.54530.1.S1_at	11/11	6	+	29753547..29755379	leucine-rich repeat family protein, putative, expressed
LOC_Os06g49110	OsAffx.15992.1.S1_at	11/11	6	+	29756047..29760821	Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110	Os.7836.1.S1_s_at	10/11	6	+	29756047..29760821	Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49120	Os.26393.1.S1_at	11/11	6	+	29761521..29765747	NmrA-like family protein, expressed
LOC_Os06g49120	OsAffx.15993.1.S1_at	11/11	6	+	29761521..29765747	NmrA-like family protein, expressed
LOC_Os06g49130	OsAffx.28181.1.S1_at	11/11	6	+	29766908..29779666	TAZ zinc finger family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000904	biological_process	cellular morphogenesis during differentiation
GO:0009826	biological_process	unidimensional cell growth
GO:0009505	cellular_component	cell wall (sensu Magnoliophyta)
GO:0005515	molecular_function	protein binding
GO:0009927	molecular_function	histidine phosphotransfer kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28180.1.S1_s_at--652--505	2	Chr06:29754616..29754640 (25 bp)	GCAGCAAGGCGCAATGCCAGGCGAC	LOC_Os06g49100
OsAffx.28180.1.S1_s_at--308--149	2	Chr06:29754618..29754642 (25 bp)	AGCAAGGCGCAATGCCAGGCGACGC	LOC_Os06g49100
OsAffx.28180.1.S1_s_at--606--471	1	Chr06:29754677..29754701 (25 bp)	GCTGGCTCCTCATAGATCGCCTTTG	LOC_Os06g49100
OsAffx.28180.1.S1_s_at--673--29	1	Chr06:29754688..29754712 (25 bp)	ATAGATCGCCTTTGCCACACCACAT	LOC_Os06g49100
OsAffx.28180.1.S1_s_at--6--217	1	Chr06:29754704..29754728 (25 bp)	ACACCACATGCCTCCGAGACGGACG	LOC_Os06g49100
OsAffx.28180.1.S1_s_at--988--163	1	Chr06:29754795..29754819 (25 bp)	AGCGAGAGCCCCAAATCCTCAATGC	LOC_Os06g49100
OsAffx.28180.1.S1_s_at--527--455	1	Chr06:29754881..29754905 (25 bp)	GCCCACAGAGCACCCGGGATACGTG	LOC_Os06g49100
OsAffx.28180.1.S1_s_at--302--135	1	Chr06:29754887..29754911 (25 bp)	AGAGCACCCGGGATACGTGTTGCCG	LOC_Os06g49100
OsAffx.28180.1.S1_s_at--409--767	1	Chr06:29754896..29754920 (25 bp)	GGGATACGTGTTGCCGCCGCTCACG	LOC_Os06g49100
OsAffx.28180.1.S1_s_at--474--417	1	Chr06:29755078..29755102 (25 bp)	CGCCATCGGGAGACAAGCTGCCGTT	LOC_Os06g49100
OsAffx.28180.1.S1_s_at--986--49	1	Chr06:29755082..29755106 (25 bp)	ATCGGGAGACAAGCTGCCGTTCCCG	LOC_Os06g49100

Target Sequence

GCAGCAAGGCGCAATGCCAGGCGACGCCGCCGACGACTCGCCGCCCAGGTGGCCGCACGCCGCTGGCTCCTCATAGATCG
CCTTTGCCACACCACATGCCTCCGAGACGGACGCCGCCGACGCCGCCGCCGCCGAGCTCGCCCACCCCATTTCACCTGCC
GCCGCCGCCGCCAACTTACAGCGAGAGCCCCAAATCCTCAATGCCGCCATCAACCTCACCACCATCCTCTCACGGCGCCT
CGCCGCCATCCTCATCCTCGTCGCCGCCCACAGAGCACCCGGGATACGTGTTGCCGCCGCTCACGCCGCCGCCGCCGACG
ACGACGCCACCAGGACACCACGCTCCCGGTCCCGGGAACACCATCCTCGCCGGCCAAGCTCTTCTTGGTCGCCACCTCAA
GGAGGCGGAAGGGAAGCTGCCGTTCCCGCCGGTGCACGGGGTGGCGTACTCGTCGCCGCCGCCGCCGCCATCGGGAGACA
AGCTGCCGTTCCCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis