Browse Element(s) Details


Os.26393.1.S1_at

Description gb:AK120907.1
DB_XREF= gi:37990530
TID=Os.26393.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.26393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30868 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031L08, full insert sequence.
FL= gb:AK120907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4912011/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49070OsAffx.15991.1.S1_at11/116+29736486..29737309expressed protein
LOC_Os06g49080Os.54886.1.S1_at11/116+29737882..29741501Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090Os.8048.1.S1_at11/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090Os.54886.1.S1_at2/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49100OsAffx.28180.1.S1_s_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_x_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49110OsAffx.15992.1.S1_at11/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110Os.7836.1.S1_s_at10/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49120Os.26393.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49120OsAffx.15993.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49130OsAffx.28181.1.S1_at11/116+29766908..29779666TAZ zinc finger family protein, expressed
LOC_Os06g49140Os.7573.1.S1_at11/116+29781086..29783933Ribosomal RNA methyltransferase 1, putative, expressed
LOC_Os06g49150OsAffx.5151.1.S1_at11/116+29785582..29787682Exostosin-3, putative, expressed
LOC_Os06g49160Os.22683.1.S1_at10/116+29788100..29789677thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os06g49170NANA6+29790165..29794255Calcium binding EGF domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26393.1.S1_at--446--2631Chr06:29762235..29762259 (25 bp)
AACCTGGTGGTCAGCGTGCATTGAT
LOC_Os06g49120
Os.26393.1.S1_at--506--3051Chr06:29762104..29762216 (25 bp)
AATCTCGCAGGGTATCAGTTGCGCC
LOC_Os06g49120
Os.26393.1.S1_at--678--9651Chr06:29762090..29762114 (25 bp)
TCAGTTGCGCCGATGTAGCAGATAT
LOC_Os06g49120
Os.26393.1.S1_at--941--4931Chr06:29762055..29762079 (25 bp)
GCATTGCATGATTCCACTGCTAGGA
LOC_Os06g49120
Os.26393.1.S1_at--993--5911Chr06:29761793..29761928 (25 bp)
GAGCTATATGAACTTGTGGCCCATT
LOC_Os06g49120
Os.26393.1.S1_at--360--7551Chr06:29761778..29761802 (25 bp)
GTGGCCCATTTACCAGATAAAGCTA
LOC_Os06g49120
Os.26393.1.S1_at--265--2471Chr06:29761754..29761778 (25 bp)
AACAACTATCTTACACCGGCATTAT
LOC_Os06g49120
Os.26393.1.S1_at--299--5971Chr06:29761721..29761745 (25 bp)
GAGAAGAACACCTGACTGATATGTC
LOC_Os06g49120
Os.26393.1.S1_at--652--10371Chr06:29761633..29761657 (25 bp)
TTTTTTCCCCATAGAAGCCGTGTGG
LOC_Os06g49120
Os.26393.1.S1_at--37--8051Chr06:29761610..29761634 (25 bp)
GGAGTTCACATGATATGCCACTTTG
LOC_Os06g49120
Os.26393.1.S1_at--991--251Chr06:29761598..29761622 (25 bp)
ATATGCCACTTTGGCCCTTTTTGTA
LOC_Os06g49120
Target Sequence 
AACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGAT
ATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGCTNAGCAAGG
GAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTNTAGAGA
AGAACACCTGACTGATATGTCTNTGAGACTCAGATATTTGCCANNNAAATCAAAATGTGTATACTTTTCAACTTGTAAAG
CATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCACTTTGGCCCTTTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis