Browse Element(s) Details


OsAffx.5151.1.S1_at

Description tigr:9634.m04786
TID=OsAffx.5151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4915011/11Exostosin-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49110OsAffx.15992.1.S1_at11/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110Os.7836.1.S1_s_at10/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49120Os.26393.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49120OsAffx.15993.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49130OsAffx.28181.1.S1_at11/116+29766908..29779666TAZ zinc finger family protein, expressed
LOC_Os06g49140Os.7573.1.S1_at11/116+29781086..29783933Ribosomal RNA methyltransferase 1, putative, expressed
LOC_Os06g49150OsAffx.5151.1.S1_at11/116+29785582..29787682Exostosin-3, putative, expressed
LOC_Os06g49160Os.22683.1.S1_at10/116+29788100..29789677thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os06g49170NANA6+29790165..29794255Calcium binding EGF domain containing protein
LOC_Os06g49180Os.7717.1.S1_a_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49180OsAffx.15994.1.S1_x_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49190Os.11169.1.S1_a_at11/116+29806826..29807453nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os06g49200Os.25325.1.A1_at11/116+29807496..29810844CUE domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0016337biological_processcell-cell adhesion
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5151.1.S1_at--587--7971Chr06:29786643..29786667 (25 bp)
GGATCTGTATACCATTCGCATGCTT
LOC_Os06g49150
OsAffx.5151.1.S1_at--160--3871Chr06:29786647..29786671 (25 bp)
CTGTATACCATTCGCATGCTTCCGT
LOC_Os06g49150
OsAffx.5151.1.S1_at--838--9971Chr06:29786652..29786676 (25 bp)
TACCATTCGCATGCTTCCGTCTATT
LOC_Os06g49150
OsAffx.5151.1.S1_at--957--971Chr06:29787261..29787285 (25 bp)
AGGAGGCCATACTGAAGTTCCCTTT
LOC_Os06g49150
OsAffx.5151.1.S1_at--453--871Chr06:29787264..29787288 (25 bp)
AGGCCATACTGAAGTTCCCTTTCGT
LOC_Os06g49150
OsAffx.5151.1.S1_at--139--2831Chr06:29787275..29787299 (25 bp)
AAGTTCCCTTTCGTGATGTTACTGC
LOC_Os06g49150
OsAffx.5151.1.S1_at--809--6691Chr06:29787277..29787301 (25 bp)
GTTCCCTTTCGTGATGTTACTGCAG
LOC_Os06g49150
OsAffx.5151.1.S1_at--68--4191Chr06:29787280..29787304 (25 bp)
CCCTTTCGTGATGTTACTGCAGGAA
LOC_Os06g49150
OsAffx.5151.1.S1_at--771--6271Chr06:29787289..29787313 (25 bp)
GATGTTACTGCAGGAAGGATATTCG
LOC_Os06g49150
OsAffx.5151.1.S1_at--1024--251Chr06:29787401..29787425 (25 bp)
ATATGCCTCTTGTAGCCACCACAGT
LOC_Os06g49150
OsAffx.5151.1.S1_at--50--9571Chr06:29787408..29787432 (25 bp)
TCTTGTAGCCACCACAGTCAAAGCT
LOC_Os06g49150
Target Sequence 
GGATCTGTATACCATTCGCATGCTTCCGTCTATTCGTGATTATGTGAATGAAAACAGGAATTGCGAGGATATTGCAATGT
CCTTTCTTGTGGCAAATGTAACTGGATCTCCACCAATATGGGTTCAAGGAGGCCATACTGAAGTTCCCTTTCGTGATGTT
ACTGCAGGAAGGATATTCGAGATTGGATCAAGCGGCATTAGCAGTTTGAAAGGCCATGATTTACAGAGATCAAAATGTCT
CAATACATTTTCTGCCATGTATGGGCATATGCCTCTTGTAGCCACCACAGTCAAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis