Browse Element(s) Details


OsAffx.28181.1.S1_at

Description tigr:9634.m04784
TID=OsAffx.28181.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TAZ zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4913011/11TAZ zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49090Os.8048.1.S1_at11/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090Os.54886.1.S1_at2/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49100OsAffx.28180.1.S1_s_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_x_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49110OsAffx.15992.1.S1_at11/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110Os.7836.1.S1_s_at10/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49120Os.26393.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49120OsAffx.15993.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49130OsAffx.28181.1.S1_at11/116+29766908..29779666TAZ zinc finger family protein, expressed
LOC_Os06g49140Os.7573.1.S1_at11/116+29781086..29783933Ribosomal RNA methyltransferase 1, putative, expressed
LOC_Os06g49150OsAffx.5151.1.S1_at11/116+29785582..29787682Exostosin-3, putative, expressed
LOC_Os06g49160Os.22683.1.S1_at10/116+29788100..29789677thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os06g49170NANA6+29790165..29794255Calcium binding EGF domain containing protein
LOC_Os06g49180Os.7717.1.S1_a_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49180OsAffx.15994.1.S1_x_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006358biological_processregulation of global transcription from RNA polymerase II promoter
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003712molecular_functiontranscription cofactor activity
GO:0004402molecular_functionhistone acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28181.1.S1_at--475--2031Chr06:29767575..29767599 (25 bp)
ACTTAAGGGACTCTTTCATCATGGG
LOC_Os06g49130
OsAffx.28181.1.S1_at--599--4731Chr06:29767342..29767475 (25 bp)
GCTGTGCCAAGATGCCGGGATTTTA
LOC_Os06g49130
OsAffx.28181.1.S1_at--549--6671Chr06:29767240..29767264 (25 bp)
GTTGCAGAAGTAACTCGCCATGAAT
LOC_Os06g49130
OsAffx.28181.1.S1_at--654--4371Chr06:29767178..29767202 (25 bp)
CCAAAGTGCTTTGTCATTCGGGTGA
LOC_Os06g49130
OsAffx.28181.1.S1_at--414--7391Chr06:29767157..29767181 (25 bp)
GTGAGATGACTCAATTTACCCATTT
LOC_Os06g49130
OsAffx.28181.1.S1_at--257--4431Chr06:29767120..29767144 (25 bp)
GCCATGGTATTTTTGGTGCGCCTGA
LOC_Os06g49130
OsAffx.28181.1.S1_at--769--7291Chr06:29767105..29767129 (25 bp)
GTGCGCCTGACTGGAACTCTGGAAG
LOC_Os06g49130
OsAffx.28181.1.S1_at--459--7071Chr06:29767053..29767077 (25 bp)
GTAATTGCTCGCTGAGTGTTACTGC
LOC_Os06g49130
OsAffx.28181.1.S1_at--378--6771Chr06:29767036..29767060 (25 bp)
GTTACTGCGAGAGCCTGCTTTGGAA
LOC_Os06g49130
OsAffx.28181.1.S1_at--352--7671Chr06:29766987..29767011 (25 bp)
GGGATAATCAGCCATTCCATTTGTT
LOC_Os06g49130
OsAffx.28181.1.S1_at--303--4311Chr06:29766971..29766995 (25 bp)
CCATTTGTTAATTACAGCCCCTACG
LOC_Os06g49130
Target Sequence 
ACTTAAGGGACTCTTTCATCATGGGGCGCAGTGCAAGATACGACTAACTAAAGGTTGTAAACAATGTGCGAGAATGTGGT
ATATAATTCGACTCCACTCCCAATCTTGCAGACAATCAGATTGTGCTGTGCCAAGATGCCGGGATTTTAAAAGTTTCGAA
AGGAAACAGAACCAGCTGTCCGAGTCTAGGAGGATGGCTTCTGTAAATGAGAGGGTAAGGCAAAGAGTTGCAGAAGTAAC
TCGCCATGAATGAAGGAATAAAATTACACAAGCAGAGAATCACTAACACCAAAGTGCTTTGTCATTCGGGTGAGATGACT
CAATTTACCCATTTAGTCATTTTCTAGCCATGGTATTTTTGGTGCGCCTGACTGGAACTCTGGAAGTGACAATAGGTGCA
TGCATTGTAGCTGGTAATTGCTCGCTGAGTGTTACTGCGAGAGCCTGCTTTGGAAATGTATATATATAGGAAAGAAACAG
GGATAATCAGCCATTCCATTTGTTAATTACAGCCCCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis