Browse Element(s) Details


Os.8048.1.S1_at

Description gb:AK069477.1
DB_XREF= gi:32979501
TID=Os.8048.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019I22, full insert sequence.
FL= gb:AK100489.1 gb:AK069477.1 gb:AK062169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4909011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49040Os.5279.1.S1_at11/116+29722468..29726091myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g49050Os.53611.1.S1_at11/116+29726337..29730922hAT dimerisation domain-containing protein, putative, expressed
LOC_Os06g49060Os.54378.1.S1_at11/116+29732807..29736190ternary complex factor MIP1, putative, expressed
LOC_Os06g49070OsAffx.15991.1.S1_at11/116+29736486..29737309expressed protein
LOC_Os06g49080Os.54886.1.S1_at11/116+29737882..29741501Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090Os.8048.1.S1_at11/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090Os.54886.1.S1_at2/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49100OsAffx.28180.1.S1_s_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_x_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49110OsAffx.15992.1.S1_at11/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110Os.7836.1.S1_s_at10/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49120Os.26393.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49120OsAffx.15993.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49130OsAffx.28181.1.S1_at11/116+29766908..29779666TAZ zinc finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8048.1.S1_at--310--2611Chr06:29748349..29748373 (25 bp)
AACGCCAGACAATTAGGCCATCTAT
LOC_Os06g49090
Os.8048.1.S1_at--875--8431Chr06:29748364..29748388 (25 bp)
GGCCATCTATTAGACTTATCTGTGA
LOC_Os06g49090
Os.8048.1.S1_at--979--1391Chr06:29748398..29748422 (25 bp)
AGACTTTATGGCCTGTCATTGTAGT
LOC_Os06g49090
Os.8048.1.S1_at--437--2631Chr06:29748458..29748482 (25 bp)
AACCATCTGGGAGTTTTGGCTCCAG
LOC_Os06g49090
Os.8048.1.S1_at--678--1611Chr06:29748481..29748505 (25 bp)
AGCTGTTCCAGCATCAACAATTTTC
LOC_Os06g49090
Os.8048.1.S1_at--632--2451Chr06:29748496..29748520 (25 bp)
AACAATTTTCTGAAGTCCTCTGCAG
LOC_Os06g49090
Os.8048.1.S1_at--390--1531Chr06:29748527..29748551 (25 bp)
AGCAGTTTTTTGCTTCCTCTGTCCA
LOC_Os06g49090
Os.8048.1.S1_at--367--9471Chr06:29748544..29748568 (25 bp)
TCTGTCCAGCGCAGAGACATCGAGT
LOC_Os06g49090
Os.8048.1.S1_at--64--6311Chr06:29748579..29748603 (25 bp)
GATGATGGCTCCTATTGTGATGGAT
LOC_Os06g49090
Os.8048.1.S1_at--214--6311Chr06:29748601..29748727 (25 bp)
GATGAGGTATCTGCTGAGAACGACA
LOC_Os06g49090
Os.8048.1.S1_at--370--5091Chr06:29749496..29749520 (25 bp)
GCACCTGCCGTGTTAGTATGTTTCT
LOC_Os06g49090
Target Sequence 
AACGCCAGACAATTAGGCCATCTATTAGACTTATCTGTGATGTAATGCAAGACTTTATGGCCTGTCATTGTAGTTGCCAG
ACTTAATGGCATATTGATGCAGTCAAGAAAACCATCTGGGAGTTTTGGCTCCAGCTGTTCCAGCATCAACAATTTTCTGA
AGTCCTCTGCAGGTTATTAGCAGTTTTTTGCTTCCTCTGTCCAGCGCAGAGACATCGAGTTGCTTAATGGGATGATGGCT
CCTATTGTGATGGATGAGGTATCTGCTGAGAACGACAAAAATGAAAATGAAGATGAATAATCTGGTGAAGGAAAAATGGG
CAATTGGGGAGCTCCAGGGTCAACAAAGGAACTCTACAACAAACAGAAGAAGAATNCACAAGAGTGAAGGGAGACATGGA
ACATTGATGTGGGCAACTAGAGCTAACAACCAGCTAACAGCAGTCAGCACCTGCCGTGTTAGTATGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis