Browse Element(s) Details


Os.22683.1.S1_at

Description gb:AK119552.1
DB_XREF= gi:37989175
TID=Os.22683.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H01, full insert sequence.
FL= gb:AK060157.1 gb:AK119552.1 gb:AK060969.1 gb:AK120468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4916010/11thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49120Os.26393.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49120OsAffx.15993.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49130OsAffx.28181.1.S1_at11/116+29766908..29779666TAZ zinc finger family protein, expressed
LOC_Os06g49140Os.7573.1.S1_at11/116+29781086..29783933Ribosomal RNA methyltransferase 1, putative, expressed
LOC_Os06g49150OsAffx.5151.1.S1_at11/116+29785582..29787682Exostosin-3, putative, expressed
LOC_Os06g49160Os.22683.1.S1_at10/116+29788100..29789677thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os06g49170NANA6+29790165..29794255Calcium binding EGF domain containing protein
LOC_Os06g49180Os.7717.1.S1_a_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49180OsAffx.15994.1.S1_x_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49190Os.11169.1.S1_a_at11/116+29806826..29807453nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os06g49200Os.25325.1.A1_at11/116+29807496..29810844CUE domain containing protein, expressed
LOC_Os06g49210OsAffx.24931.1.S1_x_at1/116+29813605..29820248retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22683.1.S1_at--875--9011Chr06:29788826..29788850 (25 bp)
TGCAAGCAGTGTCCTAGGCCCAAAC
LOC_Os06g49160
Os.22683.1.S1_at--842--3271Chr06:29788846..29788870 (25 bp)
CAAACTCTGACGCTCAGTGGGTTCA
LOC_Os06g49160
Os.22683.1.S1_at--944--10311Chr06:29788886..29789021 (25 bp)
TTTCACCAAGTTTAGCTCTAGCCCA
LOC_Os06g49160
Os.22683.1.S1_at--221--3511Chr06:29789033..29789057 (25 bp)
CATGGTCGATAGCTTCAATTCCTCC
LOC_Os06g49160
Os.22683.1.S1_at--99--8431Chr06:29789060..29789122 (25 bp)
GGCCTCCTTGATTACATCTGTGAAC
LOC_Os06g49160
Os.22683.1.S1_at--914--8811Chr06:29789235..29789259 (25 bp)
TGTTGATTCATCCAAGTCGGCGTTT
LOC_Os06g49160
Os.22683.1.S1_at--527--2851Chr06:29789248..29789272 (25 bp)
AAGTCGGCGTTTGTGTCGTCAGCCA
LOC_Os06g49160
Os.22683.1.S1_at--906--9991Chr06:29789291..29789315 (25 bp)
TAGCTTCAGCCGGTTTGAGTGGTCA
LOC_Os06g49160
Os.22683.1.S1_at--439--111Chr06:29789469..29789493 (25 bp)
ATTCGGCTGCTGTGAATCTTCGAAG
LOC_Os06g49160
Os.22683.1.S1_at--383--311Chr06:29789538..29789562 (25 bp)
ATAGCCATGGCTCTGTTTTTTCTCT
LOC_Os06g49160
Os.22683.1.S1_at--215--771NONE
ATGTCTATATAGCTCTCGTTTGCAA
NONE
Target Sequence 
TGCAAGCAGTGTCCTAGGCCCAAACTCTGACGCTCAGTGGGTTCAGAACATCAATGTAGCTTTCACCAAGTTTAGCTCTA
GCCCAGAGGAGAAGAACATGGTCGATAGCTTCAATTCCTCCTTGGCCTCCTTGATTACATCTGTGAACAAGAGTGATGTT
GATTCATCCAAGTCGGCGTTTGTGTCGTCAGCCACAACGCTGGAGAAATGGATAGCTTCAGCCGGTTTGAGTGGTCAGCT
CAAAGGATTCTAAATTTCTGACGCCAATTGAATCTGAATCGCCTGACAAGTACATGATCGGAGTAGCATTTCCTTGAAGC
AATGGTCTATATATAATGCGTCAATACCAGTAAGAATGTTTTGTCCAAGAAAAAGAATTTGAAGATATGGATTCGGCTGC
TGTGAATCTTCGAAGAGGGTATTGTAACTGAATCTTCAGTTCAGACAGAATATGTGATAATAGCCATGGCTCTGTTTTTT
CTCTCTCTCCGTGGGAAGTAAATTGCATCATTTCGTATATCACGAGATTCTTTGCAATGCAGAAGAAAATTTAGCAAAGT
TTCTTTGTTTTCATGTCTATATAGCTCTCGTTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis