Browse Element(s) Details


OsAffx.24931.1.S1_x_at

Description tigr:9631.m00032
TID=OsAffx.24931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0129011/11Nitrate/chlorate transporter, putative, expressed
LOC_Os06g492101/11retrotransposon protein, putative, unclassified, expressed
LOC_Os06g492201/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01260Os.2615.1.S1_at11/113+157536..158553Beta-expansin 1a precursor, putative, expressed
LOC_Os03g01270Os.9312.1.S1_at11/113+167680..169639Beta-expansin 1a precursor, putative, expressed
LOC_Os03g01280OsAffx.3107.1.S1_at11/113+174927..175946hypothetical protein
LOC_Os03g01290OsAffx.24931.1.S1_at11/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01290OsAffx.24931.1.S1_x_at11/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01290OsAffx.4023.1.S1_x_at1/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01300Os.10171.1.S1_at11/113+186677..187465Cortical cell delineating protein precursor, putative, expressed
LOC_Os03g01310Os.9346.1.S1_at11/113+189424..190168Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g01310Os.10171.1.S1_at1/113+189424..190168Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g01320Os.37616.1.S1_at5/113+198336..199410retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015706biological_processnitrate transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015112molecular_functionnitrate transporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24931.1.S1_x_at--903--7371Chr03:183442..183466 (25 bp)
GTGACGCTGTCGGTGTTCTACCTCC
LOC_Os03g01290
OsAffx.24931.1.S1_x_at--421--3553Chr06:29825209..29825230 (22 bp)
CATCGGGCAGCTGGACTTCTTCCTG
LOC_Os06g49220
OsAffx.24931.1.S1_x_at--531--5931Chr03:183564..183588 (25 bp)
GAGCACGGGCCTGTTCCTGAGCACG
LOC_Os03g01290
OsAffx.24931.1.S1_x_at--635--8651Chr03:183596..183620 (25 bp)
TGGGCTTCTTCTTCAGCACGGCGCT
LOC_Os03g01290
OsAffx.24931.1.S1_x_at--92--4731Chr03:183618..183642 (25 bp)
GCTGGTCACCGTGGTGCACAAGGTC
LOC_Os03g01290
OsAffx.24931.1.S1_x_at--761--7251Chr03:183631..183655 (25 bp)
GTGCACAAGGTCACGGCGGAGTCCC
LOC_Os03g01290
OsAffx.24931.1.S1_x_at--164--9251Chr03:183668..183692 (25 bp)
TCGCCGACAACCTGGACGAGGGAAG
LOC_Os03g01290
OsAffx.24931.1.S1_x_at--280--8191Chr03:183688..183712 (25 bp)
GGAAGGCTGGACAACTTCTACTGGC
LOC_Os03g01290
OsAffx.24931.1.S1_x_at--345--2211Chr03:183698..183722 (25 bp)
ACAACTTCTACTGGCTGCTGGGTGG
LOC_Os03g01290
OsAffx.24931.1.S1_x_at--535--391Chr03:183724..183748 (25 bp)
ATCAGCGTGGTGAACCTAGCGGTGT
LOC_Os03g01290
OsAffx.24931.1.S1_x_at--881--2631Chr03:183736..183760 (25 bp)
AACCTAGCGGTGTTCGTGGCAGCAG
LOC_Os03g01290
Target Sequence 
GTGACGCTGTCGGTGTTCTACCTCCTGCCGCAGTTCCTCCTGGTGGGCGCCGGCGAGGCCTTCACCTACATCGGGCAGCT
GGACTTCTTCCTGCGCGAGTGCCCCAAGGGGATGAAGACCATGAGCACGGGCCTGTTCCTGAGCACGCTCTCGCTGGGCT
TCTTCTTCAGCACGGCGCTGGTCACCGTGGTGCACAAGGTCACGGCGGAGTCCCGGCGGCCATGGCTCGCCGACAACCTG
GACGAGGGAAGGCTGGACAACTTCTACTGGCTGCTGGGTGGGATCAGCGTGGTGAACCTAGCGGTGTTCGTGGCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24931.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis