Browse Element(s) Details


Os.10171.1.S1_at

Description gb:AY466108.1
DB_XREF= gi:39748091
GEN=LTP1
TID=Os.10171.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.10171 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) lipid transfer protein-like protein (LTP1) mRNA, complete cds.
PROD=lipid transfer protein-like protein
FL= gb:AY466108.1 gb:AK103618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0130011/11Cortical cell delineating protein precursor, putative, expressed
LOC_Os03g013101/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01270Os.9312.1.S1_at11/113+167680..169639Beta-expansin 1a precursor, putative, expressed
LOC_Os03g01280OsAffx.3107.1.S1_at11/113+174927..175946hypothetical protein
LOC_Os03g01290OsAffx.24931.1.S1_at11/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01290OsAffx.24931.1.S1_x_at11/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01290OsAffx.4023.1.S1_x_at1/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01300Os.10171.1.S1_at11/113+186677..187465Cortical cell delineating protein precursor, putative, expressed
LOC_Os03g01310Os.9346.1.S1_at11/113+189424..190168Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g01310Os.10171.1.S1_at1/113+189424..190168Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g01320Os.37616.1.S1_at5/113+198336..199410retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10171.1.S1_at--982--3651Chr03:186880..186904 (25 bp)
CTTCACCATGCAGATGGGTGCAGTA
LOC_Os03g01300
Os.10171.1.S1_at--350--3452Chr03:186900..186924 (25 bp)
CAGTAGTGCAGGCATGCGAGCCCTA
LOC_Os03g01300
Os.10171.1.S1_at--864--1371Chr03:187065..187089 (25 bp)
AGAGCGAGCAGTGCTGCCCGTTGCT
LOC_Os03g01300
Os.10171.1.S1_at--891--9831Chr03:187241..187265 (25 bp)
TAAATTAATCGATCCTCCGATCCCT
LOC_Os03g01300
Os.10171.1.S1_at--115--9291Chr03:187256..187280 (25 bp)
TCCGATCCCTTAATTACCATACCAT
LOC_Os03g01300
Os.10171.1.S1_at--348--10471Chr03:187269..187293 (25 bp)
TTACCATACCATTACACCATGCATC
LOC_Os03g01300
Os.10171.1.S1_at--397--10131Chr03:187306..187330 (25 bp)
TATATAAACCCTTTCGCACGTACTT
LOC_Os03g01300
Os.10171.1.S1_at--14--5111Chr03:187321..187345 (25 bp)
GCACGTACTTATACTATGTTTTGTC
LOC_Os03g01300
Os.10171.1.S1_at--301--7211Chr03:187360..187384 (25 bp)
GTCGAACGATCGATCTATCACTGAT
LOC_Os03g01300
Os.10171.1.S1_at--374--731Chr03:187390..187414 (25 bp)
ATGATTGATCCATCAGCCTGATCTC
LOC_Os03g01300
Os.10171.1.S1_at--1129--3371Chr03:187403..187427 (25 bp)
CAGCCTGATCTCTGTATCTTGTTAT
LOC_Os03g01300
Target Sequence 
CTTCACCATGCAGATGGGTGCAGTAGTGCAGGCATGCGAGCCCTACTGCCCCACACCGACGCCGCCGGTGACGCCGCCTC
CGTCGCCGCCGTCGGGTGGAGGGAATAAGTGCCCGATCGACGCGCTGAAGCTGAGCGTGTGCGCCAACGTGCTCAACCTG
CTGAAGCTGAAGATCGGCGTGCCGGAGAGCGAGCAGTGCTGCCCGTTGCTGGGTGGCCTCGTCGACCTCGACGCCGCCGT
CTGCCTCTGCACCGCCATCAAGGCCAACATCCTCGGCATCAATCTCAACATCCCCGTCGATCTCTCTCTCCTTCTCAACT
ACTGCCACAAGACCTGCCCCTCCGACTTCACCTGCCCTCTNTAAATTAATCGATCCTCCGATCCCTTAATTACCATACCA
TTACACCATGCATCAATATCCATATATATATAAACCCTTTCGCACGTACTTATACTATGTTTTGTCATACATATATATGT
GTCGAACGATCGATCTATCACTGATATGATATGATTGATCCATCAGCCTGATCTCTGTATCTTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis