Browse Element(s) Details


OsAffx.3107.1.S1_at

Description tigr:9631.m00031
TID=OsAffx.3107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0128011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01250Os.24715.2.A1_a_at11/113+148216..1534622-phosphoglycerate kinase, putative, expressed
LOC_Os03g01250Os.24715.3.S1_x_at8/113+148216..1534622-phosphoglycerate kinase, putative, expressed
LOC_Os03g01260Os.2615.1.S1_at11/113+157536..158553Beta-expansin 1a precursor, putative, expressed
LOC_Os03g01270Os.9312.1.S1_at11/113+167680..169639Beta-expansin 1a precursor, putative, expressed
LOC_Os03g01280OsAffx.3107.1.S1_at11/113+174927..175946hypothetical protein
LOC_Os03g01290OsAffx.24931.1.S1_at11/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01290OsAffx.24931.1.S1_x_at11/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01290OsAffx.4023.1.S1_x_at1/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01300Os.10171.1.S1_at11/113+186677..187465Cortical cell delineating protein precursor, putative, expressed
LOC_Os03g01310Os.9346.1.S1_at11/113+189424..190168Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g01310Os.10171.1.S1_at1/113+189424..190168Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g01320Os.37616.1.S1_at5/113+198336..199410retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3107.1.S1_at--167--7451Chr03:175123..175147 (25 bp)
GTGTCCGTGAACATCGCGCCGCCAA
LOC_Os03g01280
OsAffx.3107.1.S1_at--899--5091Chr03:175156..175180 (25 bp)
GCACGACCGTTGAGACCAGCCACAA
LOC_Os03g01280
OsAffx.3107.1.S1_at--835--6651Chr03:175164..175188 (25 bp)
GTTGAGACCAGCCACAACGCGTCCA
LOC_Os03g01280
OsAffx.3107.1.S1_at--337--4831Chr03:175241..175265 (25 bp)
GCTCATCGCCGGGAAGCAGCGCATT
LOC_Os03g01280
OsAffx.3107.1.S1_at--1023--9291Chr03:175359..175383 (25 bp)
TCCGCCTCATGGGTCATGGCCAGGT
LOC_Os03g01280
OsAffx.3107.1.S1_at--925--4131Chr03:175390..175690 (25 bp)
CGCTCCGCTGGAGGCCGAGAAAGCA
LOC_Os03g01280
OsAffx.3107.1.S1_at--642--5531Chr03:175735..175759 (25 bp)
GAAACAGATCGATCAATGCGATGCT
LOC_Os03g01280
OsAffx.3107.1.S1_at--633--611Chr03:175750..175774 (25 bp)
ATGCGATGCTATTGCTATCTCTCTC
LOC_Os03g01280
OsAffx.3107.1.S1_at--1132--4871Chr03:175757..175781 (25 bp)
GCTATTGCTATCTCTCTCTATTCTT
LOC_Os03g01280
OsAffx.3107.1.S1_at--880--10211Chr03:175775..175799 (25 bp)
TATTCTTCTACTCCTGCTTGAGCTG
LOC_Os03g01280
OsAffx.3107.1.S1_at--42--3851Chr03:175788..175812 (25 bp)
CTGCTTGAGCTGTCGCGGAGCAAGA
LOC_Os03g01280
Target Sequence 
GTGTCCGTGAACATCGCGCCGCCAACGCCGCCTGCACGACCGTTGAGACCAGCCACAACGCGTCCACGCCGACCAGCTGC
GCCACGCTCGACGCCTGCCCGAGCGCACACCACAGGCCGCTCATCGCCGGGAAGCAGCGCATTCGCTCTCCGCCGCCAAT
CCGGCCCCCGCTCCCCGCGTTCGGGCCGGAGCTCCAGCCCCCACTCCACCCCGAGACCACGCCGCCGTCTCGTCGCTCCG
CCTCATGGGTCATGGCCAGGTCGCCGCCGCTCCGCTGGAGGCCGAGAAAGCAAGCAAGGAAAATAACAAGTGAGGAAAGG
AGCAAAGCAGACAAAAGAAACAGATCGATCAATGCGATGCTATTGCTATCTCTCTCTATTCTTCTACTCCTGCTTGAGCT
GTCGCGGAGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis