Browse Element(s) Details


Os.24715.3.S1_x_at

Description gb:AK106501.1
DB_XREF= gi:32991710
TID=Os.24715.3
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0404G11.22 (P0404G11.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E11, full insert sequence.
FL= gb:AK106501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2826011/112-phosphoglycerate kinase, putative, expressed
LOC_Os03g012508/112-phosphoglycerate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28230NANA7+16484854..16487478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.14491.2.S1_x_at2/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.47463.1.S1_x_at1/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28250OsAffx.28642.1.S1_at11/117+16501471..16503020lipase class 3 family protein, putative
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein
LOC_Os07g28310NANA7+16530903..16532984retrotransposon protein, putative, unclassified
LOC_Os07g28320OsAffx.16451.1.S1_x_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28320OsAffx.16451.1.S1_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28330NANA7+16533868..16534731hypothetical protein
LOC_Os07g28340NANA7+16543049..16544307retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24715.3.S1_x_at--1083--4592Chr07:16511885..16511909 (25 bp)
GCGAGAATGCCGATCACTACTACGT
LOC_Os07g28260
Os.24715.3.S1_x_at--703--972Chr07:16511932..16511952 (21 bp)
AGGATGCTCACCGTCACCAAGATTC
LOC_Os07g28260
Os.24715.3.S1_x_at--979--2812Chr07:16512043..16512066 (24 bp)
AAGATTCCTAATCATGTTGCCATTA
LOC_Os07g28260
Os.24715.3.S1_x_at--284--6691Chr07:16512057..16512081 (25 bp)
GTTGCCATTAAGATTGCCCTCGAAC
LOC_Os07g28260
Os.24715.3.S1_x_at--54--2251Chr07:16512087..16512111 (25 bp)
AAATTGCTTGTCGACAACAGCCTGC
LOC_Os07g28260
Os.24715.3.S1_x_at--256--2491Chr07:16512102..16512485 (25 bp)
AACAGCCTGCTTGATGTTTCTCAGA
LOC_Os07g28260
Os.24715.3.S1_x_at--387--7472Chr07:16512960..16512984 (25 bp)
GTGTGGAACTGCTTGTACGGGAAAA
LOC_Os07g28260
Os.24715.3.S1_x_at--492--7432Chr07:16513145..16513169 (25 bp)
GTGTATGAGTTGCTACGGACATCAA
LOC_Os07g28260
Os.24715.3.S1_x_at--1051--8312Chr07:16513286..16513310 (25 bp)
GGCTCGGGATTTTGATTCTCCTGAA
LOC_Os07g28260
Os.24715.3.S1_x_at--144--5372Chr07:16513308..16513332 (25 bp)
GAAGAGCTTATCACAGAGTTCTGCA
LOC_Os07g28260
Os.24715.3.S1_x_at--1085--8172Chr07:16513511..16513531 (21 bp)
GGAAGCCAATTATCATCGAGGGAAT
LOC_Os07g28260
Target Sequence 
GCGAGAATGCCGATCACTACTACGTCCTCTCCAGGTTCCTCCTCTGCAGGATGCTCACCGTCACCAAGATTCCTAATCAT
GTTGCCATTAAGATTGCCCTCGAACTCAAGAAATTGCTTGTCGACAACAGCCTGCTTGATGTTTCTCAGAGTGACTTAGA
AGCTAACCTATTCAAGCTGATGGAGAAGCGGGGATACGGCGAGGATTATATTAATCGGTATAAAATGATGACCAGATTCC
ATCATCAAAGAGTACCACTAGTAGTTTTAGTGTGTGGAACTGCTTGTACGGGAAAATCAACAATTGCTACGCAACTAGCT
GGAAGGTTGAATCTACCAAATGTTTTGCAGACAGACATGGTGTATGAGTTGCTACGGACATCAACAGATGCCCCTCTTAC
TTCGGTGCCCGTGTGGGCTCGGGATTTTGATTCTCCTGAAGAGCTTATCACAGAGTTCTGCAGAGAATGCAGAGTTGTTC
GCAAAGGTTTGGCTGGTGATTTGAAGAAGGCCATGAAAGATGGGAAGCCAATTATCATCGAGGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24715.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis