Browse Element(s) Details


Os.25500.1.S1_at

Description gb:CA766204
DB_XREF= gi:27548035
DB_XREF=AF53-Rpf_10_I03_T7_006.ab1
CLONE=C0003651
TID=Os.25500.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25500 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2826010/112-phosphoglycerate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28230NANA7+16484854..16487478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.14491.2.S1_x_at2/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.47463.1.S1_x_at1/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28250OsAffx.28642.1.S1_at11/117+16501471..16503020lipase class 3 family protein, putative
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein
LOC_Os07g28310NANA7+16530903..16532984retrotransposon protein, putative, unclassified
LOC_Os07g28320OsAffx.16451.1.S1_x_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28320OsAffx.16451.1.S1_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28330NANA7+16533868..16534731hypothetical protein
LOC_Os07g28340NANA7+16543049..16544307retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25500.1.S1_at--121--7151Chr07:16519157..16519181 (25 bp)
GTCTATCGATCATCTGTTATGCGGT
LOC_Os07g28260
Os.25500.1.S1_at--1052--9731NONE
TAATACACCATCTGAGCCCTAATTT
NONE
Os.25500.1.S1_at--1041--8551Chr07:16519265..16519289 (25 bp)
TGGATCTTTTCTCCATGTACAATCC
LOC_Os07g28260
Os.25500.1.S1_at--773--8731Chr07:16519280..16519304 (25 bp)
TGTACAATCCCTTTCTTTAAACCAT
LOC_Os07g28260
Os.25500.1.S1_at--139--10111Chr07:16519335..16519359 (25 bp)
TATGGCTATACTCCACGACATTCTT
LOC_Os07g28260
Os.25500.1.S1_at--1055--4091Chr07:16519350..16519374 (25 bp)
CGACATTCTTGATTTGGCACTTCCA
LOC_Os07g28260
Os.25500.1.S1_at--307--2191Chr07:16519399..16519423 (25 bp)
ACACTTCCAATCTTTTCAGGTTCTG
LOC_Os07g28260
Os.25500.1.S1_at--536--7531Chr07:16519458..16519482 (25 bp)
GTGGCAGCATCATCAGAAGTAATTC
LOC_Os07g28260
Os.25500.1.S1_at--680--5651Chr07:16519486..16519510 (25 bp)
GACAGTTTTATAACCTTGCTGATTA
LOC_Os07g28260
Os.25500.1.S1_at--322--8151Chr07:16519519..16519543 (25 bp)
GGACAACACTCCAAGCATGAAGCGA
LOC_Os07g28260
Os.25500.1.S1_at--680--4591Chr07:16519540..16519564 (25 bp)
GCGAATGGTGCTACTTTGTTCAGTT
LOC_Os07g28260
Target Sequence 
GTCTATCGATCATCTGTTATGCGGTTTAAGATGAGAATGGNCATTGAATGACTAATACACCATCTGAGCCCTAATTTTAT
ATTTCAAATGTTGAGAATTATTGACAAATGGATCTTTTCTCCATGTACAATCCCTTTCTTTAAACCATAATTCATTTCTT
TTCTTAAACAACAGAGCATATGGCTATACTCCACGACATTCTTGATTTGGCACTTCCAATCTTTTTTTTNCCTTTTGACC
AAACACTTCCAATCTTTTCAGGTTCTGATCTGTATTTCAAATGGATCTTTATTTTATTAATGTGGCAGCATCATCAGAAG
TAATTCTCNGACAGTTTTATAACCTTGCTGATTATTAGTATCGGACAACACTCCAAGCATGAAGCGAATGGTGCTACTTT
GTTCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis