Browse Element(s) Details


OsAffx.28642.1.S1_at

Description tigr:9635.m02743
TID=OsAffx.28642.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2825011/11lipase class 3 family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28210OsAffx.22336.1.S1_at11/117+16472161..16476734retrotransposon protein, putative, unclassified
LOC_Os07g28220NANA7+16480702..16481550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28230NANA7+16484854..16487478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.14491.2.S1_x_at2/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.47463.1.S1_x_at1/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28250OsAffx.28642.1.S1_at11/117+16501471..16503020lipase class 3 family protein, putative
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28642.1.S1_at--700--6291Chr07:16502426..16502450 (25 bp)
GATGACGGAGCAAGGTTACAACCTC
LOC_Os07g28250
OsAffx.28642.1.S1_at--1132--8831Chr07:16502494..16502518 (25 bp)
TGATCAACTTGCTGCACCCGAATGA
LOC_Os07g28250
OsAffx.28642.1.S1_at--1092--5391Chr07:16502606..16502630 (25 bp)
GAAGCTATTCGAACGGCTTTCTCCG
LOC_Os07g28250
OsAffx.28642.1.S1_at--580--7491Chr07:16502630..16502654 (25 bp)
GTGGACGCCGGAACTGTACGTGCAC
LOC_Os07g28250
OsAffx.28642.1.S1_at--1101--8171Chr07:16502714..16502738 (25 bp)
GGAACGCTTCCGTGGCATCGGCAAT
LOC_Os07g28250
OsAffx.28642.1.S1_at--724--7531Chr07:16502725..16502749 (25 bp)
GTGGCATCGGCAATTCGGCAATGAA
LOC_Os07g28250
OsAffx.28642.1.S1_at--71--5671Chr07:16502763..16502787 (25 bp)
GACATGTTCTTTTCAGTGCTCGGGA
LOC_Os07g28250
OsAffx.28642.1.S1_at--519--5431Chr07:16502786..16502810 (25 bp)
GAAAAACAAGGAGCGGCCACACCTC
LOC_Os07g28250
OsAffx.28642.1.S1_at--1071--10791Chr07:16502874..16502898 (25 bp)
TTGTCCAAGTGTAAGATGCTCCAGG
LOC_Os07g28250
OsAffx.28642.1.S1_at--364--8171Chr07:16502897..16502921 (25 bp)
GGAACAACTGCACCAATACAAGAAG
LOC_Os07g28250
OsAffx.28642.1.S1_at--225--5411Chr07:16502918..16502942 (25 bp)
GAAGCTGGCCTTCAACGCGCACAGC
LOC_Os07g28250
Target Sequence 
GATGACGGAGCAAGGTTACAACCTCCCGACCTTCCTCTTCAATCCGCCGCAGGTGTCACCGGCTCCGGTGATCAACTTGC
TGCACCCGAATGAGAAGGCAAAAAGGCACCTGCACGCCGCGAGCTCCCTCCTCAAGGTAGGCCTAGGCAAGATCATGAAC
TCCCACGAGGAGCACATGGAGAAGCTATTCGAACGGCTTTCTCCGTGGACGCCGGAACTGTACGTGCACGAGAGCCACCC
CATCTGCCAGGGTTACATCGACTACTTCGAGCAGCGGCAACTAGTGCAGGAACGCTTCCGTGGCATCGGCAATTCGGCAA
TGAAGCTGTCGTACCGAGACATGTTCTTTTCAGTGCTCGGGAAAAACAAGGAGCGGCCACACCTCCTGCCGTCAGCACTG
CTGTGGAAGAACTCGAGGGTGGACGATGACGTGGAGGATCACAAGAAATTGTCCAAGTGTAAGATGCTCCAGGAACAACT
GCACCAATACAAGAAGCTGGCCTTCAACGCGCACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis