Browse Element(s) Details


OsAffx.16451.1.S1_x_at

Description gb:NM_187239.1
DB_XREF= gi:34901563
TID=OsAffx.16451.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0404G11.29 (P0404G11.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2832011/11hypothetical protein
LOC_Os04g174503/11retrotransposon protein, putative, unclassified
LOC_Os07g157301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein
LOC_Os07g28310NANA7+16530903..16532984retrotransposon protein, putative, unclassified
LOC_Os07g28320OsAffx.16451.1.S1_x_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28320OsAffx.16451.1.S1_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28330NANA7+16533868..16534731hypothetical protein
LOC_Os07g28340NANA7+16543049..16544307retrotransposon protein, putative, unclassified
LOC_Os07g28350NANA7+16547938..16548285hypothetical protein
LOC_Os07g28360NANA7+16549629..16553867retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16451.1.S1_x_at--884--5431Chr07:16533294..16533318 (25 bp)
GAACGATTTGCTATCTTAACAACGT
LOC_Os07g28320
OsAffx.16451.1.S1_x_at--1035--2571Chr07:16533314..16533338 (25 bp)
AACGTTTACTGAATCGGCCGCGGAG
LOC_Os07g28320
OsAffx.16451.1.S1_x_at--724--1958Chr07:16533365..16533389 (25 bp)
ACTGGTTGCACAACTTGTTGCTGGA
LOC_Os07g28320
OsAffx.16451.1.S1_x_at--1010--6611Chr07:16533393..16533417 (25 bp)
GTTGTACAACCTGCTAAATCGGAAG
LOC_Os07g28320
OsAffx.16451.1.S1_x_at--592--2571Chr07:16533409..16533433 (25 bp)
AATCGGAAGTGTCTGTTGAACCGGC
LOC_Os07g28320
OsAffx.16451.1.S1_x_at--379--1777Chr07:16533428..16533452 (25 bp)
ACCGGCTGCTGCTGTATTGGATCAA
LOC_Os07g28320
OsAffx.16451.1.S1_x_at--1029--34912Chr12:21063304..21063324 (21 bp)
CATGGCAGCAACTTGATCTTGCGTC
NONE
OsAffx.16451.1.S1_x_at--313--10717Chr07:16533493..16533517 (25 bp)
TTGCGTCGGCCGATTCACAACCTGC
LOC_Os07g28320
OsAffx.16451.1.S1_x_at--1113--84712Chr07:16533529..16533553 (25 bp)
TGGCTGCTCTCTCATTAACAACTGA
LOC_Os07g28320
OsAffx.16451.1.S1_x_at--907--25510Chr07:16533548..16533572 (25 bp)
AACTGAGGGTTCACCAGCTGGCCTA
LOC_Os07g28320
OsAffx.16451.1.S1_x_at--692--8433Chr07:16533567..16533591 (25 bp)
GGCCTAGTGCCAATGCTGACGGAGC
LOC_Os07g28320
Target Sequence 
GAACGATTTGCTATCTTAACAACGTTTACTGAATCGGCCGCGGAGGCTGTTGCCTTGGTGGCGTTTGCTGGACTGGTTGC
ACAACTTGTTGCTGGATTGGTTGTACAACCTGCTAAATCGGAAGTGTCTGTTGAACCGGCTGCTGCTGTATTGGATCAAC
AGCAGGTTGAGGCGGCAGAAACATGGCAGCAACTTGATCTTGCGTCGGCCGATTCACAACCTGCCCACTATGCTGTGGCT
GCTCTCTCATTAACAACTGAGGGTTCACCAGCTGGCCTAGTGCCAATGCTGACGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16451.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis