Browse Element(s) Details


Os.25325.1.A1_at

Description gb:AK060142.1
DB_XREF= gi:32970160
TID=Os.25325.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H01, full insert sequence.
FL= gb:AK060142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4920011/11CUE domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49140Os.7573.1.S1_at11/116+29781086..29783933Ribosomal RNA methyltransferase 1, putative, expressed
LOC_Os06g49150OsAffx.5151.1.S1_at11/116+29785582..29787682Exostosin-3, putative, expressed
LOC_Os06g49160Os.22683.1.S1_at10/116+29788100..29789677thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os06g49170NANA6+29790165..29794255Calcium binding EGF domain containing protein
LOC_Os06g49180Os.7717.1.S1_a_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49180OsAffx.15994.1.S1_x_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49190Os.11169.1.S1_a_at11/116+29806826..29807453nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os06g49200Os.25325.1.A1_at11/116+29807496..29810844CUE domain containing protein, expressed
LOC_Os06g49210OsAffx.24931.1.S1_x_at1/116+29813605..29820248retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49220Os.49996.1.S1_at10/116+29823395..29825693POT family protein, expressed
LOC_Os06g49220OsAffx.24931.1.S1_x_at1/116+29823395..29825693POT family protein, expressed
LOC_Os06g49230NANA6+29827472..29828092Peptide transporter PTR2, putative
LOC_Os06g49240NANA6+29828477..29830126POT family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25325.1.A1_at--607--5451Chr06:29808180..29808451 (25 bp)
GAAATTTCACGGCAACCTAGGCCTA
LOC_Os06g49200
Os.25325.1.A1_at--809--3711Chr06:29808158..29808182 (25 bp)
CTACCTGATGGTGATTTGTCTGAAA
LOC_Os06g49200
Os.25325.1.A1_at--318--1531Chr06:29808128..29808152 (25 bp)
AGCAGTCTTGATCAATCTCTTCAGA
LOC_Os06g49200
Os.25325.1.A1_at--140--8611Chr06:29808081..29808105 (25 bp)
TGGTGCGAAATCTGCCTCGGCAATG
LOC_Os06g49200
Os.25325.1.A1_at--439--3011Chr06:29807831..29807855 (25 bp)
AATGCATCCTGCTGTAGATTCTGTA
LOC_Os06g49200
Os.25325.1.A1_at--1013--6571Chr06:29807815..29807839 (25 bp)
GATTCTGTATTCTTTTACTGCTAGT
LOC_Os06g49200
Os.25325.1.A1_at--139--5231Chr06:29807707..29807731 (25 bp)
GACTACTTGGTTTTCTGGGTTTGAG
LOC_Os06g49200
Os.25325.1.A1_at--819--5571Chr06:29807677..29807701 (25 bp)
GAAAGTGTGCATCGCAGTTTCAGTT
LOC_Os06g49200
Os.25325.1.A1_at--720--7811Chr06:29807622..29807646 (25 bp)
GGTCTTTTGATGTATTCGTCAGTCA
LOC_Os06g49200
Os.25325.1.A1_at--266--5451Chr06:29807583..29807607 (25 bp)
GAACCCAGTGGATTGTGCAGCAGCG
LOC_Os06g49200
Os.25325.1.A1_at--246--4191Chr06:29807542..29807566 (25 bp)
CCCTGCGAGTGCTACCTATGGTTGT
LOC_Os06g49200
Target Sequence 
GAAATTTCACGGCAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCTTCAGAAGG
GTATGTCACTGACGACTTNTGGTGCGAAATCTGCCTCGGCAATGATTCCAGATAACATTTCTCTTCATGATAAACTGGGT
GTACAGAAAGACGATAAGCCAGCAATTGCTTNTACCACAAATTAATNTGCAATGCATCCTGCTGTAGATTCTGTATTCTT
TTACTGCTAGTTTGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTGTCTTCTTA
ATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTGAGCTTTTGAAAGTGTGCATCGCAGTTTCAGTTTGCTTGTTAGT
TGTTACCGAGAGTTGTATAGGTCTTTTGATGTATTCGTCAGTCACTATTATGTACTCTGAACCCAGTGGATTGTGCAGCA
GCGGCAGCTCTCGTGTACCCCCTGCGAGTGCTACCTATGGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25325.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis