Browse Element(s) Details


Os.49996.1.S1_at

Description gb:AK119527.1
DB_XREF= gi:37989150
TID=Os.49996.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B05, full insert sequence.
FL= gb:AK119527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4922010/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49180Os.7717.1.S1_a_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49180OsAffx.15994.1.S1_x_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49190Os.11169.1.S1_a_at11/116+29806826..29807453nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os06g49200Os.25325.1.A1_at11/116+29807496..29810844CUE domain containing protein, expressed
LOC_Os06g49210OsAffx.24931.1.S1_x_at1/116+29813605..29820248retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49220Os.49996.1.S1_at10/116+29823395..29825693POT family protein, expressed
LOC_Os06g49220OsAffx.24931.1.S1_x_at1/116+29823395..29825693POT family protein, expressed
LOC_Os06g49230NANA6+29827472..29828092Peptide transporter PTR2, putative
LOC_Os06g49240NANA6+29828477..29830126POT family protein
LOC_Os06g49250Os.18958.1.S1_at11/116+29837300..29840266POT family protein, expressed
LOC_Os06g49250Os.46739.1.A1_x_at1/116+29837300..29840266POT family protein, expressed
LOC_Os06g49260NANA6+29849304..29854923Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49996.1.S1_at--598--7631Chr06:29825298..29825322 (25 bp)
GGGACTACCTGAGCTCCATCATCGT
LOC_Os06g49220
Os.49996.1.S1_at--463--4451Chr06:29825433..29825457 (25 bp)
GCCTCAATCTTGCAGCGTTTATGAG
LOC_Os06g49220
Os.49996.1.S1_at--104--4651Chr06:29825447..29825471 (25 bp)
GCGTTTATGAGCTGCGCCATGAAGT
LOC_Os06g49220
Os.49996.1.S1_at--337--5091Chr06:29825527..29825551 (25 bp)
GCACCTAGGCTCATTACCGCTGGAT
LOC_Os06g49220
Os.49996.1.S1_at--84--6231Chr06:29825549..29825573 (25 bp)
GATGCGCCTTAAGATTCGGACGTAC
LOC_Os06g49220
Os.49996.1.S1_at--758--8111Chr06:29825566..29825590 (25 bp)
GGACGTACACGATACCTACATGCTG
LOC_Os06g49220
Os.49996.1.S1_at--348--2111Chr06:29825583..29825607 (25 bp)
ACATGCTGTATATTGAAACCTGGGA
LOC_Os06g49220
Os.49996.1.S1_at--929--3891Chr06:29825602..29825626 (25 bp)
CTGGGAAATACATCACGAATCGCTT
LOC_Os06g49220
Os.49996.1.S1_at--904--2271Chr06:29825627..29825650 (24 bp)
AAATCGATCGGACGGCAGAGGCCCT
LOC_Os06g49220
Os.49996.1.S1_at--945--8251Chr06:29825639..29825663 (25 bp)
GGCAGAGGCCCTAGGTGCAGAAAAA
LOC_Os06g49220
Os.49996.1.S1_at--501--3691NONE
CTAGGCTTGGTGTTTTTCTCCATTT
NONE
Target Sequence 
GGGACTACCTGAGCTCCATCATCGTGACGGCCGTGTCGTGGGCGACGGCGACCGGCGGGCGGCCGGGGTGGATCCCCGAC
GACCTCAACGAGGGCCACCTTGATCGCTTCTTCTGGATGATGGCCGGACTTGGCNGCCTCAATCTTGCAGCGTTTATGAG
CTGCGCCATGAAGTACAAAACCAGGAAGGCNTGTTGATGTTTCTGGGCTTGTTTGGGAGACCTGCTGCTGCACCTAGGCT
CATTACCGCTGGATGCGCCTTAAGATTCGGACGTACACGATACCTACATGCTGTATATTGAAACCTGGGAAATACATCAC
GAATCGCTTAAATCGATCGGACGGCAGAGGCCCTAGGTGCAGAAAAACCACGTCCACCTGCTGCTAGGCTTGGTGTTTTT
CTCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis