Browse Element(s) Details


OsAffx.19635.1.S1_at

Description tigr:9640.m01224
TID=OsAffx.19635.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=32.7 kDa jasmonate-induced protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1272011/11jasmonate-induced protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12690Os.26430.1.A1_at11/1112+6983900..6985966expressed protein
LOC_Os12g12700NANA12+6996744..7002779retrotransposon protein, putative, unclassified
LOC_Os12g12710NANA12+7003544..7006810transposon protein, putative, unclassified
LOC_Os12g12720OsAffx.19635.1.S1_at11/1112+7010135..7011399jasmonate-induced protein, putative
LOC_Os12g12730Os.52107.1.S1_at11/1112+7013070..7013730EF hand family protein, expressed
LOC_Os12g12740Os.20089.1.S1_at1/1112+7016733..7021508Leucine Rich Repeat family protein, expressed
LOC_Os12g12750NANA12+7022610..7022951hypothetical protein
LOC_Os12g12760NANA12+7024427..7027089retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19635.1.S1_at--329--9031Chr12:7010353..7010377 (25 bp)
TGCACATGGCCTGCATATCTATGCT
LOC_Os12g12720
OsAffx.19635.1.S1_at--996--4951Chr12:7010365..7010389 (25 bp)
GCATATCTATGCTGGCGACTTAGTC
LOC_Os12g12720
OsAffx.19635.1.S1_at--467--4091Chr12:7010380..7010404 (25 bp)
CGACTTAGTCGCCATAATTCCTTCA
LOC_Os12g12720
OsAffx.19635.1.S1_at--51--3171Chr12:7010395..7010419 (25 bp)
AATTCCTTCAGCTTGGTATTTGAGA
LOC_Os12g12720
OsAffx.19635.1.S1_at--302--7651Chr12:7010674..7010698 (25 bp)
GGGAGTTCATTATGGCATCTGGTGT
LOC_Os12g12720
OsAffx.19635.1.S1_at--1063--1451Chr12:7010707..7010731 (25 bp)
AGAAGGTGCATGAGCGAAGATCCGA
LOC_Os12g12720
OsAffx.19635.1.S1_at--488--251Chr12:7010726..7010750 (25 bp)
ATCCGAGGGTAACATCATTGAACTT
LOC_Os12g12720
OsAffx.19635.1.S1_at--893--5451Chr12:7010745..7010769 (25 bp)
GAACTTACAATCCATGGGTTTTGCC
LOC_Os12g12720
OsAffx.19635.1.S1_at--372--7671Chr12:7010760..7010784 (25 bp)
GGGTTTTGCCCCAGTCTGAAAGGCA
LOC_Os12g12720
OsAffx.19635.1.S1_at--760--2191Chr12:7010876..7010896 (21 bp)
ACAAAGTGCCTTCCCACCAAGGTTG
LOC_Os12g12720
OsAffx.19635.1.S1_at--139--4131Chr12:7010971..7010995 (25 bp)
CGCAGTGGCGAGGTTGTTGATTCAA
LOC_Os12g12720
Target Sequence 
TGCACATGGCCTGCATATCTATGCTGGCGACTTAGTCGCCATAATTCCTTCAGCTTGGTATTTGAGAATGAAAGGGGAGT
TCATTATGGCATCTGGTGTCATCTACAAGAAGGTGCATGAGCGAAGATCCGAGGGTAACATCATTGAACTTACAATCCAT
GGGTTTTGCCCCAGTCTGAAAGGCACAAAGTGCCTTCCCACCAAGGTTGGGCCATGGGGTGGAAATGGAGGGACACCTCA
AGATATCACAGAGACTCCAAAGCGTCTAGAATCCATCACAATACGCAGTGGCGAGGTTGTTGATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis