Browse Element(s) Details


Os.20089.1.S1_at

Description gb:AK103549.1
DB_XREF= gi:32988758
TID=Os.20089.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132F01, full insert sequence.
FL= gb:AK103549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g127401/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12700NANA12+6996744..7002779retrotransposon protein, putative, unclassified
LOC_Os12g12710NANA12+7003544..7006810transposon protein, putative, unclassified
LOC_Os12g12720OsAffx.19635.1.S1_at11/1112+7010135..7011399jasmonate-induced protein, putative
LOC_Os12g12730Os.52107.1.S1_at11/1112+7013070..7013730EF hand family protein, expressed
LOC_Os12g12740Os.20089.1.S1_at1/1112+7016733..7021508Leucine Rich Repeat family protein, expressed
LOC_Os12g12750NANA12+7022610..7022951hypothetical protein
LOC_Os12g12760NANA12+7024427..7027089retrotransposon protein, putative, unclassified
LOC_Os12g12770OsAffx.23366.2.S1_s_at1/1112+7038068..7042745transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12780Os.46314.3.S1_at1/1112+7044453..7047680transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12780OsAffx.265.1.S1_at1/1112+7044453..7047680transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12780OsAffx.7362.1.S1_x_at1/1112+7044453..7047680transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20089.1.S1_at--880--3471Chr12:7016743..7016767 (25 bp)
CAGGTGCCTGTGCTCCATATGATGA
LOC_Os12g12740
Os.20089.1.S1_at--989--8931Chr12:7016721..7016745 (25 bp)
TGACGACCCATAAGCAAGACCTGTT
NONE
Os.20089.1.S1_at--874--2671Chr12:7016662..7016686 (25 bp)
AAGCGGGACTCGACAATGAAGCATC
NONE
Os.20089.1.S1_at--562--8991Chr12:7016646..7016670 (25 bp)
TGAAGCATCCGCATGCTGGTTTTGT
NONE
Os.20089.1.S1_at--984--7871Chr12:7016629..7016653 (25 bp)
GGTTTTGTGGCGGTATGGCTCATAC
NONE
Os.20089.1.S1_at--612--8491Chr12:7016614..7016638 (25 bp)
TGGCTCATACCATGGCTTGTGGCAT
NONE
Os.20089.1.S1_at--1042--6611Chr12:7016539..7016563 (25 bp)
GTTGGATCAGTTTGCTTGCCAGGTA
NONE
Os.20089.1.S1_at--79--1031Chr12:7016519..7016543 (25 bp)
AGGTATTACTCCCTGGCCTATTTCG
NONE
Os.20089.1.S1_at--301--4971Chr12:7016460..7016484 (25 bp)
GCATCAATCAGTGTGGTGGCATCTA
NONE
Os.20089.1.S1_at--103--8271Chr12:7016355..7016379 (25 bp)
GGCAGTGTTATGTTTTGATCCAGGA
NONE
Os.20089.1.S1_at--637--10511Chr12:7016307..7016331 (25 bp)
TTCACACCCCTCCTTGGAAGGTGAG
NONE
Target Sequence 
CAGGTGCCTGTGCTCCATATGATGACGACCCATAAGCAAGACCTGTTATATTGATAATCATGTAACNTGCTTCGGTATCT
GAAGCGGGACTCGACAATGAAGCATCCGCATGCTGGTTTTGTGGCGGTATGGCTCATACCATGGCTTGTGGCATGCCTTC
CTGCTGGGAATGGGTTAATGTGCTGGATCGAGATGGAACCAATTGTTGGATCAGTTTGCTTGCCAGGTATTACTCCCTGG
CCTATTTCGGCCTGGGGATATTGCTGCGTCGCCAGCATCACCTGCATCAATCAGTGTGGTGGCATCTATGTTGGAGATGG
GACAACGATGATTGACTTGTGAGTGTCATGATTGATGGAAGAATGTTGTATCATCTTAGTGGGTATGGGGCAGTGTTATG
TTTTGATCCAGGAAAGGGAAATGATTGAGTTCATACTTCACACCCCTCCTTGGAAGGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis