Browse Element(s) Details


Os.52107.1.S1_at

Description gb:AK064732.1
DB_XREF= gi:32974750
TID=Os.52107.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C02, full insert sequence.
FL= gb:AK064732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1273011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12700NANA12+6996744..7002779retrotransposon protein, putative, unclassified
LOC_Os12g12710NANA12+7003544..7006810transposon protein, putative, unclassified
LOC_Os12g12720OsAffx.19635.1.S1_at11/1112+7010135..7011399jasmonate-induced protein, putative
LOC_Os12g12730Os.52107.1.S1_at11/1112+7013070..7013730EF hand family protein, expressed
LOC_Os12g12740Os.20089.1.S1_at1/1112+7016733..7021508Leucine Rich Repeat family protein, expressed
LOC_Os12g12750NANA12+7022610..7022951hypothetical protein
LOC_Os12g12760NANA12+7024427..7027089retrotransposon protein, putative, unclassified
LOC_Os12g12770OsAffx.23366.2.S1_s_at1/1112+7038068..7042745transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009266biological_processresponse to temperature stimulus
GO:0009612biological_processresponse to mechanical stimulus
GO:0009646biological_processresponse to absence of light
GO:0009652biological_processthigmotropism
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52107.1.S1_at--458--4731Chr12:7013632..7013656 (25 bp)
GCTGGGCGAGTCGTTCAAGAACTTC
LOC_Os12g12730
Os.52107.1.S1_at--1101--5791Chr12:7013580..7013604 (25 bp)
GACGCCACCATGGACAAGATCGACG
LOC_Os12g12730
Os.52107.1.S1_at--557--4351Chr12:7013383..7013407 (25 bp)
CCAGAACGGCGACGGATTCATCACC
LOC_Os12g12730
Os.52107.1.S1_at--242--5731Chr12:7013298..7013322 (25 bp)
GACTGCCGCCGGATGATCAGCATGG
LOC_Os12g12730
Os.52107.1.S1_at--317--7531Chr12:7013195..7013219 (25 bp)
GTGGCTAGCCTCTGGCTTGGCCTAA
LOC_Os12g12730
Os.52107.1.S1_at--806--3591Chr12:7013180..7013204 (25 bp)
CTTGGCCTAATCTTTGTCCTAATCT
LOC_Os12g12730
Os.52107.1.S1_at--333--8711Chr12:7013166..7013190 (25 bp)
TGTCCTAATCTTGTTGCACTTGCAC
LOC_Os12g12730
Os.52107.1.S1_at--229--8811Chr12:7013155..7013179 (25 bp)
TGTTGCACTTGCACGCATGGCTTAA
LOC_Os12g12730
Os.52107.1.S1_at--803--3491Chr12:7013140..7013164 (25 bp)
CATGGCTTAATTAACCTGCTTGTGG
LOC_Os12g12730
Os.52107.1.S1_at--714--4931Chr12:7013123..7013147 (25 bp)
GCTTGTGGTATTTTATGCACCGCTC
LOC_Os12g12730
Os.52107.1.S1_at--369--5091Chr12:7013107..7013131 (25 bp)
GCACCGCTCGGTTTGTAGATAATTT
LOC_Os12g12730
Target Sequence 
GCTGGGCGAGTCGTTCAAGAACTTCGGCATCTTCATCCCCGACGACGAGCTCGACGCCACCATGGACAAGATCGACGCCA
ACGGCGACGGCTGCGTCGACGTCGAGGAGTTCGGCCTCCTCTACCGCTCCATCCTCGGCGACGACGCCGCCGGCCGAGCC
CCCAGGACGGCGGCGGCGGCCATCGGCGGCGAGGGCGGCGCCCCCGACGACGAGGACGAGGGGATGCGGGAGGCGTTCAA
CGTGTTCGACCAGAACGGCGACGGATTCATCACCGTCGACGAGCTCCGGTCCGTGCTGTCCAGCCTCGGGCTCAAGCATG
GCCGCACCGCCGACGACTGCCGCCGGATGATCAGCATGGTGGACGCCGACGGCGACGGCCGCGTCGACTTCAAGGAGTTC
AAGCAGATGATGCGCGGCGGCGGGTTCGCCGCGCTCGGTGGCTAGCCTCTGGCTTGGCCTAATCTTTGTCCTAATCTTGT
TGCACTTGCACGCATGGCTTAATTAACCTGCTTGTGGTATTTTATGCACCGCTCGGTTTGTAGATAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis