Browse Element(s) Details


OsAffx.19634.1.S1_at

Description tigr:9640.m01216
TID=OsAffx.19634.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1264010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12600OsAffx.19633.1.S1_at11/1112+6944098..6946847expressed protein
LOC_Os12g12610NANA12+6949934..6950399hypothetical protein
LOC_Os12g12620NANA12+6955174..6956448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12630OsAffx.18440.1.S1_at1/1112+6956627..6958063hypothetical protein
LOC_Os12g12640OsAffx.19634.1.S1_at10/1112+6964506..6966110hypothetical protein
LOC_Os12g12640OsAffx.20040.1.S1_x_at1/1112+6964506..6966110hypothetical protein
LOC_Os12g12650Os.46184.1.A1_at1/1112+6970547..6976644hypothetical protein
LOC_Os12g12650OsAffx.12703.1.S1_at1/1112+6970547..6976644hypothetical protein
LOC_Os12g12664Os.53960.1.S1_at11/1112+6975799..6980990expressed protein
LOC_Os12g12664Os.50231.1.S1_x_at10/1112+6975799..6980990expressed protein
LOC_Os12g12680OsAffx.24099.1.S1_x_at1/1112+6980808..6983825transposon protein, putative, Pong sub-class
LOC_Os12g12690Os.26430.1.A1_at11/1112+6983900..6985966expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19634.1.S1_at--659--7371Chr12:6966053..6966077 (25 bp)
GTGTCGGCAGTATGGGCGCGGTGGA
LOC_Os12g12640
OsAffx.19634.1.S1_at--159--8491Chr12:6965969..6965993 (25 bp)
TGGCGGCGCAAATCATGGCACTCAA
LOC_Os12g12640
OsAffx.19634.1.S1_at--681--3191Chr12:6965894..6965918 (25 bp)
CAAGAAAGGATTATGACCGGTGGGC
LOC_Os12g12640
OsAffx.19634.1.S1_at--402--9131NONE
TGCGAGCTAGAGCACGAACCACCTA
NONE
OsAffx.19634.1.S1_at--367--1352Chr12:6965124..6965147 (24 bp)
AGAGCACGAACCACCTAAGGACTGT
LOC_Os12g12640
OsAffx.19634.1.S1_at--6--9772Chr12:6965109..6965133 (25 bp)
TAAGGACTGTGTCGTGGTCTTGCTC
LOC_Os12g12640
OsAffx.19634.1.S1_at--841--3992Chr12:6965097..6965121 (25 bp)
CGTGGTCTTGCTCCTTGTAAATGAA
LOC_Os12g12640
OsAffx.19634.1.S1_at--947--2811Chr12:6965050..6965074 (25 bp)
AAGTTGGATGGGTTATACTCATCTC
LOC_Os12g12640
OsAffx.19634.1.S1_at--318--9911Chr12:6965035..6965059 (25 bp)
TACTCATCTCTGTTTTAGATGGGAA
LOC_Os12g12640
OsAffx.19634.1.S1_at--400--791Chr12:6965017..6965041 (25 bp)
ATGGGAATGTCCCATCTTTCCGTTT
LOC_Os12g12640
OsAffx.19634.1.S1_at--90--5271Chr12:6965015..6965037 (23 bp)
GAATGTCCCATCTTTCCGTTTGGGT
LOC_Os12g12640
Target Sequence 
GTGTCGGCAGTATGGGCGCGGTGGATGGATGAGGACGGGGAGGACTGCCATCGGTGGCGTCGGAGCTACGACAGCTGTGG
GGGATGGCGGCGCAAATCATGGCACTCAACTGCGTCGTCTACCTGCGGCCGCAAGAAAGAGAGGAAGAAAAGAGAAAAGC
AAGAAAGGATTATGACCGGTGGGCGGCGGCCGGACCGGACTGAGGTGGCTAGCGTCGACGACGACGAGGCGTGCGAGCTA
GAGCACGAACCACCTAAGGACTGTGTCGTGGTCTTGCTCCTTGTAAATGAAAAGCAAGACACTTTTTTTAATGAAGTTGG
ATGGGTTATACTCATCTCTGTTTTAGATGGGAATGTCCCATCTTTCCGTTTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis