Browse Element(s) Details


Os.50231.1.S1_x_at

Description gb:AK120234.1
DB_XREF= gi:37989857
TID=Os.50231.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043L17, full insert sequence.
FL= gb:AK120234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1266410/11expressed protein
LOC_Os12g092903/11tRNA pseudouridine synthase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12620NANA12+6955174..6956448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12630OsAffx.18440.1.S1_at1/1112+6956627..6958063hypothetical protein
LOC_Os12g12640OsAffx.19634.1.S1_at10/1112+6964506..6966110hypothetical protein
LOC_Os12g12640OsAffx.20040.1.S1_x_at1/1112+6964506..6966110hypothetical protein
LOC_Os12g12650Os.46184.1.A1_at1/1112+6970547..6976644hypothetical protein
LOC_Os12g12650OsAffx.12703.1.S1_at1/1112+6970547..6976644hypothetical protein
LOC_Os12g12664Os.53960.1.S1_at11/1112+6975799..6980990expressed protein
LOC_Os12g12664Os.50231.1.S1_x_at10/1112+6975799..6980990expressed protein
LOC_Os12g12680OsAffx.24099.1.S1_x_at1/1112+6980808..6983825transposon protein, putative, Pong sub-class
LOC_Os12g12690Os.26430.1.A1_at11/1112+6983900..6985966expressed protein
LOC_Os12g12700NANA12+6996744..7002779retrotransposon protein, putative, unclassified
LOC_Os12g12710NANA12+7003544..7006810transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016439molecular_functiontRNA-pseudouridine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50231.1.S1_x_at--1092--3031Chr12:6976578..6976602 (25 bp)
AATCCTGGCGCAAAGTTCCTGGAAC
LOC_Os12g12664
Os.50231.1.S1_x_at--1136--8911Chr12:6976519..6976543 (25 bp)
TGAGCCGATCCTTGGTGTTGATGTA
LOC_Os12g12664
Os.50231.1.S1_x_at--719--6652Chr12:4865094..4865118 (25 bp)
GTTGATGTAGCTGGCCTTGATGCTC
LOC_Os12g09290
Os.50231.1.S1_x_at--506--9894Chr12:4865149..4865173 (25 bp)
TACTTGATGCGGATGTGCTTGCTGC
LOC_Os12g09290
Os.50231.1.S1_x_at--286--9078Chr12:4865164..4865185 (22 bp)
TGCTTGCTGCGCTCATGGAAGATGA
LOC_Os12g09290
Os.50231.1.S1_x_at--225--6311Chr12:6976413..6976437 (25 bp)
GATGAGATTCTTCGCCAAGGCCAAA
LOC_Os12g12664
Os.50231.1.S1_x_at--437--10351Chr12:6976356..6976380 (25 bp)
TTTAGCATCTCTGCCCAGGAGCGAG
LOC_Os12g12664
Os.50231.1.S1_x_at--1027--5251Chr12:6976166..6976190 (25 bp)
GAATCCCTTCAGTCTAGAGTCGTGT
LOC_Os12g12664
Os.50231.1.S1_x_at--837--1151Chr12:6976149..6976173 (25 bp)
AGTCGTGTGGCTTCATGTCTAGACA
LOC_Os12g12664
Os.50231.1.S1_x_at--1062--5611Chr12:6976128..6976152 (25 bp)
GACAACTCGGCATTTTTGCAGCACT
LOC_Os12g12664
Os.50231.1.S1_x_at--604--5051Chr12:6976111..6976135 (25 bp)
GCAGCACTGTTATTCCATCAATTAT
LOC_Os12g12664
Target Sequence 
AATCCTGGCGCAAAGTTCCTGGAACTTGACCCGCCCAAGAGACTTGGTGAGAAGGTCGGTGAGCCGATCCTTGGTGTTGA
TGTAGCTGGCCTTGATGCTCCCCTCGTCCAAGCAGCTCCGAATGAAATGATACTTGATGCGGATGTGCTTGCTGCGCTCA
TGGAAGATGAGATTCTTCGCCAAGGCCAAAGCGGACTTGCTGTCCACCCTGAGCTCCACTGCTTTAGCATCTCTGCCCAG
GAGCGAGATCGCCCAACAGCTGAGCCAACAAGAGAGCTGTATCTAAGGATGACATAGTGATCCTTGATGGAGCTGGAGAT
AATTAAGAAGGCCATTGAAGAGAGAGAGAGCTGAGCAGGTTCATTCTATGCTAGTTTAGTTTTACATGAATCCCTCAAAC
ATGAAGCCACATGAATCCCTTCAGTCTAGAGTCGTGTGGCTTCATGTCTAGACAACTCGGCATTTTTGCAGCACTGTTAT
TCCATCAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50231.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis