Browse Element(s) Details


Os.22696.2.S1_x_at

Description gb:D21299.1
DB_XREF= gi:429015
TID=Os.22696.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22696 (NCBI UniGene Cluster)
UG_TITLE=SS498 mRNA for ribosomal protein, partial sequence
DEF=Oryza sativa SS498 mRNA for ribosomal protein, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g067509/1160S ribosomal protein L3, putative, expressed
LOC_Os12g070102/1160S ribosomal protein L3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06730Os.51341.1.S1_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730Os.51341.1.S1_x_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730OsAffx.31339.1.S1_s_at1/1111+3284397..3284973expressed protein
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06750Os.22696.1.S1_at11/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06750Os.22696.2.S1_x_at9/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06760Os.12174.1.S1_at11/1111+3293877..3299232expressed protein
LOC_Os11g06770OsAffx.7025.1.S1_at11/1111+3303434..3305854AP2 domain containing protein, expressed
LOC_Os11g06780Os.51809.1.S1_at10/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06780Os.46117.1.S1_at1/1111+3309986..3312193Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0005842cellular_componentcytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22696.2.S1_x_at--347--6731Chr11:3291637..3291661 (25 bp)
GTTCTACAAGAACTGGTGCAAGAGC
LOC_Os11g06750
Os.22696.2.S1_x_at--788--5291Chr11:3291667..3291691 (25 bp)
GAAGGCTTTCACCAAGTATGCTCTC
LOC_Os11g06750
Os.22696.2.S1_x_at--300--10531Chr11:3291674..3291698 (25 bp)
TTCACCAAGTATGCTCTCAAGTATG
LOC_Os11g06750
Os.22696.2.S1_x_at--1042--3731Chr11:3291689..3291713 (25 bp)
CTCAAGTATGATAGCGATGCCGGCA
LOC_Os11g06750
Os.22696.2.S1_x_at--91--2931Chr11:3291716..3291740 (25 bp)
AAGGAAATCCAAATGCAGCTTGAGA
LOC_Os11g06750
Os.22696.2.S1_x_at--994--1451NONE
AGAAGTATGCTTCTTTTGTCCGTGT
NONE
Os.22696.2.S1_x_at--1134--9551NONE
TCTTTTGTCCGTGTGATCGTGCACA
NONE
Os.22696.2.S1_x_at--1086--6391Chr11:3291772..3291918 (25 bp)
GATCGTGCACACTCAGATTAGGAAA
LOC_Os11g06750
Os.22696.2.S1_x_at--575--5392Chr12:3429794..3429818 (25 bp)
GAAGCAGAAGAAGGCTCACCTCATG
LOC_Os12g07010
Os.22696.2.S1_x_at--110--2952Chr12:3429804..3429828 (25 bp)
AAGGCTCACCTCATGGAGATCCAGA
LOC_Os12g07010
Os.22696.2.S1_x_at--881--6011Chr11:3291955..3291978 (24 bp)
GAGATCCAGATCAATGGTGGTACCC
LOC_Os11g06750
Target Sequence 
GTTCTACAAGAACTGGTGCAAGAGCAAGAAGAAGGCTTTCACCAAGTATGCTCTCAAGTATGATAGCGATGCCGGCAAGA
AGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTTTTGTCCGTGTGATCGTGCACACTCAGATTAGGAAA
ATNAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCCAGATCAATGGTGGTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22696.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis