Browse Element(s) Details


Os.51341.1.S1_at

Description gb:AK062599.1
DB_XREF= gi:32972617
TID=Os.51341.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-G11, full insert sequence.
FL= gb:AK062599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0673011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06700OsAffx.30847.2.S1_at11/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06700Os.13941.1.S1_x_at1/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06730Os.51341.1.S1_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730Os.51341.1.S1_x_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730OsAffx.31339.1.S1_s_at1/1111+3284397..3284973expressed protein
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06750Os.22696.1.S1_at11/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06750Os.22696.2.S1_x_at9/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06760Os.12174.1.S1_at11/1111+3293877..3299232expressed protein
LOC_Os11g06770OsAffx.7025.1.S1_at11/1111+3303434..3305854AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51341.1.S1_at--561--9671Chr11:3284895..3284919 (25 bp)
TCACCAATGGCGCTCGCCGTGAAGC
LOC_Os11g06730
Os.51341.1.S1_at--715--3811Chr11:3284862..3284886 (25 bp)
CTCCTACTACTTGCCGCGGCAGCAG
LOC_Os11g06730
Os.51341.1.S1_at--219--3911Chr11:3284837..3284861 (25 bp)
CTGGAGGAAGCAGCACGACGACCGT
LOC_Os11g06730
Os.51341.1.S1_at--301--951Chr11:3284833..3284857 (25 bp)
AGGAAGCAGCACGACGACCGTGCCG
LOC_Os11g06730
Os.51341.1.S1_at--1059--4691Chr11:3284794..3284818 (25 bp)
GCTGGGCGCGGCGTTCGACGGGATG
LOC_Os11g06730
Os.51341.1.S1_at--792--9391Chr11:3284669..3284693 (25 bp)
TCGTCAACGGCGAGTCCTACCTCGG
LOC_Os11g06730
Os.51341.1.S1_at--709--4891Chr11:3284576..3284600 (25 bp)
GCTTCACCGCCCAGGAGGCCGACAT
LOC_Os11g06730
Os.51341.1.S1_at--279--7731Chr11:3284446..3284470 (25 bp)
GGTGGCGCGTTGAACACGCTCTTAA
LOC_Os11g06730
Os.51341.1.S1_at--588--8391Chr11:3284443..3284467 (25 bp)
GGCGCGTTGAACACGCTCTTAATGT
LOC_Os11g06730
Os.51341.1.S1_at--191--6671Chr11:3284438..3284462 (25 bp)
GTTGAACACGCTCTTAATGTAATAA
LOC_Os11g06730
Os.51341.1.S1_at--625--2231Chr11:3284398..3284422 (25 bp)
AAATTAATTATAGCCAGTTTGCAGC
LOC_Os11g06730
Target Sequence 
TCACCAATGGCGCTCGCCGTGAAGCTCGCCGTCCTCCTACTACTTGCCGCGGCAGCAGCTGGAGGAAGCAGCACGACGAC
CGTGCCGCCGCTGGAGGAGAGGCTGGGCGCGGCGTTCGACGGGATGGCGGCGGCGGCGGAGGGAGGAGGAGGGGGAGGGT
GGATGATGGAGTGCTGGAGCGCGGTGACGAAGCTGGGGTCGTGCACGAACGAGATCGTGCTCTTCTTCGTCAACGGCGAG
TCCTACCTCGGCCCGGACTGCTGCGTCGCCATCCGCACCGTCACCCGCCGCTGCTGGCCGGCCATGCTCGCCTCCATCGG
CTTCACCGCCCAGGAGGCCGACATCCTCCGCGGCTTCTGCGACGCCGAGCTCGCCGCCCCGCCCCCGCCCTCCACCAACG
CCTCCTCCGCCGCCCCCGCGCCGGCGCCGGCGTCCGCTTAGCGCCGGCCGGTGGCGCGTTGAACACGCTCTTAATGTAAT
AAAATAAACTTGGAAATAAATTAATTATAGCCAGTTTGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis