Browse Element(s) Details


OsAffx.30847.2.S1_at

Description tigr:9639.m00604
TID=OsAffx.30847.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0670011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06660Os.8626.1.S1_x_at2/1111+3239913..3240191hypothetical protein
LOC_Os11g06660Os.8626.3.S1_x_at1/1111+3239913..3240191hypothetical protein
LOC_Os11g06660Os.8626.1.S1_a_at1/1111+3239913..3240191hypothetical protein
LOC_Os11g06670OsAffx.7023.1.S1_at10/1111+3241728..3245525expressed protein
LOC_Os11g06680Os.24268.1.S1_x_at11/1111+3246004..3250412expressed protein
LOC_Os11g06680Os.24268.2.S1_at7/1111+3246004..3250412expressed protein
LOC_Os11g06690OsAffx.30846.1.S1_at11/1111+3252302..3256841serine esterase family protein, expressed
LOC_Os11g06700OsAffx.30847.2.S1_at11/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06700Os.13941.1.S1_x_at1/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06730Os.51341.1.S1_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730Os.51341.1.S1_x_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730OsAffx.31339.1.S1_s_at1/1111+3284397..3284973expressed protein
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30847.2.S1_at--1003--1591Chr11:3263554..3263578 (25 bp)
AGCTCCTCCACGACAATCTAGAAGC
LOC_Os11g06700
OsAffx.30847.2.S1_at--455--3051Chr11:3263568..3263592 (25 bp)
AATCTAGAAGCCAAATCCCGACTCT
LOC_Os11g06700
OsAffx.30847.2.S1_at--261--2651Chr11:3263575..3263599 (25 bp)
AAGCCAAATCCCGACTCTACAAGGA
LOC_Os11g06700
OsAffx.30847.2.S1_at--1152--2911Chr11:3263595..3263619 (25 bp)
AAGGACCCGGCGCTCTGCAGCATCT
LOC_Os11g06700
OsAffx.30847.2.S1_at--394--9271Chr11:3263620..3263644 (25 bp)
TCCTGATGAACAACGGCCGGTACAT
LOC_Os11g06700
OsAffx.30847.2.S1_at--262--2471Chr11:3263628..3263652 (25 bp)
AACAACGGCCGGTACATGCTGCAGA
LOC_Os11g06700
OsAffx.30847.2.S1_at--95--4171Chr11:3263665..3263689 (25 bp)
CGCCGGAGATCAACGCGGTGGTCGG
LOC_Os11g06700
OsAffx.30847.2.S1_at--939--2671Chr11:3263706..3263730 (25 bp)
AAGCGGTCGACGGACCTGAGGCAGT
LOC_Os11g06700
OsAffx.30847.2.S1_at--157--9411Chr11:3263950..3263974 (25 bp)
TCGTGCCGGCGTACAGGTCGTTCCT
LOC_Os11g06700
OsAffx.30847.2.S1_at--805--8011Chr11:3263977..3264001 (25 bp)
GGAGGTTCTCGCAGAGCTTCAGCGC
LOC_Os11g06700
OsAffx.30847.2.S1_at--533--9491Chr11:3263983..3264007 (25 bp)
TCTCGCAGAGCTTCAGCGCCGGGAG
LOC_Os11g06700
Target Sequence 
AGCTCCTCCACGACAATCTAGAAGCCAAATCCCGACTCTACAAGGACCCGGCGCTCTGCAGCATCTTCCTGATGAACAAC
GGCCGGTACATGCTGCAGAAGATCCGGGGATCGCCGGAGATCAACGCGGTGGTCGGCGAGGCGTGGTCGAGGAAGCGGTC
GACGGACCTGAGGCAGTACCACAAGAACTACCAGCGGGAGACGTGGAGCCGCGTGCTGACGCTGCTCCGCGACGACGGGG
TGATCACGGTGAAGGGGTCGGTGCAGAAGCCGGTGCTCAAGGAGAGGTTCAAGCAATTCAACGCAGCCATGGACGAGATC
CAGAGGACGCAGGGCGCGTGGGTGGTGAGCGACGAGCAGCTGCAGTCGGAGCTCAGGGTGTCGATCGCCGCCGTCGTCGT
GCCGGCGTACAGGTCGTTCCTGGGGAGGTTCTCGCAGAGCTTCAGCGCCGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30847.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis