Browse Element(s) Details


Os.53912.1.S1_x_at

Description gb:AK100788.1
DB_XREF= gi:32985997
TID=Os.53912.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121A17, full insert sequence.
FL= gb:AK100788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g346004/11ABA/WDS induced protein, expressed
LOC_Os11g067201/11ABA/WDS induced protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34550OsAffx.26326.1.S1_at10/114+20722436..20725489hypothetical protein
LOC_Os04g34560Os.15412.1.S1_x_at8/114+20725737..20727018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g34570OsAffx.26327.3.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_s_at8/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.16519.1.S1_at3/114+20727524..20733043expressed protein
LOC_Os04g34580OsAffx.26328.1.S1_at11/114+20736777..20737918FAD binding domain containing protein, expressed
LOC_Os04g34590OsAffx.11069.5.S1_x_at11/114+20738513..20741527hypothetical protein
LOC_Os04g34600Os.15942.4.S1_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.1.S1_s_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.5.S1_x_at10/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.53912.1.S1_x_at4/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34610Os.23113.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_x_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_x_at11/114+20762269..20765400expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_at11/114+20762269..20765400expressed protein
LOC_Os04g34620Os.20989.1.S1_at10/114+20762269..20765400expressed protein
LOC_Os04g34630Os.5130.1.S1_at11/114+20767108..20768449Peroxidase 72 precursor, putative, expressed
LOC_Os04g34640OsAffx.14137.1.S1_at11/114+20769808..20770973hypothetical protein
LOC_Os04g34640OsAffx.10222.1.S1_x_at1/114+20769808..20770973hypothetical protein
LOC_Os04g34650OsAffx.14902.1.A1_at3/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34650Os.27632.1.S1_at1/114+20772830..20777291retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53912.1.S1_x_at--818--8291NONE
GGCTACAACAACAGGATCGAGGAGG
NONE
Os.53912.1.S1_x_at--826--2732Chr11:3274695..3274719 (25 bp)
AAGAAGCACCACCTCTTCGGCTGAT
LOC_Os11g06720
Os.53912.1.S1_x_at--69--10611Chr04:20747789..20747813 (25 bp)
TTCGGCTGATGATCCATCGATCGAT
LOC_Os04g34600
Os.53912.1.S1_x_at--694--7651Chr04:20747671..20747695 (25 bp)
GGGTTTTTGTACGTATGGGCTCAGT
LOC_Os04g34600
Os.53912.1.S1_x_at--144--7591Chr04:20747655..20747679 (25 bp)
GGGCTCAGTATGTGTACACCTCGTA
LOC_Os04g34600
Os.53912.1.S1_x_at--843--9831Chr04:20747585..20747609 (25 bp)
TAAAGCTATCTGTTGCTCTGTGCCT
NONE
Os.53912.1.S1_x_at--903--9091Chr04:20747572..20747596 (25 bp)
TGCTCTGTGCCTCTGTGTAATTAAG
NONE
Os.53912.1.S1_x_at--1124--8731Chr04:20747557..20747581 (25 bp)
TGTAATTAAGTCCATGGTCTGCCAT
NONE
Os.53912.1.S1_x_at--177--7451Chr04:20747520..20747544 (25 bp)
GTGTACACCTTGACTTCATGACTAG
NONE
Os.53912.1.S1_x_at--955--6931Chr04:20747492..20747516 (25 bp)
GTAGTGACGTACGTATTTGATGTAT
NONE
Os.53912.1.S1_x_at--186--212Chr04:26126001..26126368 (25 bp)
ATATTTTGGGTATGGCCGAGTTTAG
NONE
Target Sequence 
GGCTACAACAACAGGATCGAGGAGGGCGTGGCGGCGGCGGCGGCGCTGGGGAGCGGCGGGTTCGCGTTCCACGAGCACCA
CGACAAGAAGGAGGCCGGCGCCTTCGCCATGTACGAGAGGCGAGGGGAAGAAGAAGCACCACCTCTTCGGCTGATGATCC
ATCGATCGATCGCGCCATGCATGCGGCGGCGGCGGCGCCATGGCCGGCGTCCGCGCGCACGCGTAAGGTGTGGCCATGGG
CGTGTGCAGCTGAATAAGAGCCGGGGTTTTTGTACGTATGGGCTCAGTATGTGTACACCTCGTATATGGTATGGATGTAC
GTATAAGCGTATAGTGTGTACTATACCAATAAAGCTATCTGTTGCTCTGTGCCTCTGTGTAATTAAGTCCATGGTCTGCC
ATGCTTGTGTAGTTGTGTACACCTTGACTTCATGACTAGTGAGTAGTGACGTACGTATTTGATGTATTTCATATTTTGGG
TATGGCCGAGTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53912.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis