Browse Element(s) Details


Os.5130.1.S1_at

Description gb:AK108989.1
DB_XREF= gi:32994198
TID=Os.5130.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-F11, full insert sequence.
FL= gb:AK108989.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3463011/11Peroxidase 72 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34600Os.15942.4.S1_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.1.S1_s_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.5.S1_x_at10/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.53912.1.S1_x_at4/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34610Os.23113.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_x_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_x_at11/114+20762269..20765400expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_at11/114+20762269..20765400expressed protein
LOC_Os04g34620Os.20989.1.S1_at10/114+20762269..20765400expressed protein
LOC_Os04g34630Os.5130.1.S1_at11/114+20767108..20768449Peroxidase 72 precursor, putative, expressed
LOC_Os04g34640OsAffx.14137.1.S1_at11/114+20769808..20770973hypothetical protein
LOC_Os04g34640OsAffx.10222.1.S1_x_at1/114+20769808..20770973hypothetical protein
LOC_Os04g34650OsAffx.14902.1.A1_at3/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34650Os.27632.1.S1_at1/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34659OsAffx.27736.1.S1_at7/114+20778305..20778545NA
LOC_Os04g34670Os.8207.1.S1_at11/114+20779783..20785748tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g34680OsAffx.29169.1.S1_at5/114+20788986..20790931retrotransposon protein, putative, unclassified
LOC_Os04g34680OsAffx.29169.3.S1_at5/114+20788986..20790931retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5130.1.S1_at--1161--5411Chr04:20767877..20767901 (25 bp)
GACGGGAAGCCGGACTTCACCCTGA
LOC_Os04g34630
Os.5130.1.S1_at--236--6691Chr04:20767987..20768011 (25 bp)
GTTCCGGTTCGACAATCAGTACTAC
LOC_Os04g34630
Os.5130.1.S1_at--1147--9231Chr04:20768058..20768082 (25 bp)
TCCTCACCAAGAGCCGGGAGACGAT
LOC_Os04g34630
Os.5130.1.S1_at--507--1491Chr04:20768108..20768132 (25 bp)
AGCAACGAGCTCTTCTTCGCGCAGT
LOC_Os04g34630
Os.5130.1.S1_at--683--6131Chr04:20768209..20768233 (25 bp)
GAGGGTCAACCACTTCTAGAACCCT
LOC_Os04g34630
Os.5130.1.S1_at--170--11Chr04:20768223..20768247 (25 bp)
TCTAGAACCCTTCCACGTACGTACG
LOC_Os04g34630
Os.5130.1.S1_at--355--4571Chr04:20768248..20768272 (25 bp)
GCGCCCACGGCCGATCGATGTGATG
LOC_Os04g34630
Os.5130.1.S1_at--227--791Chr04:20768275..20768299 (25 bp)
ATGTGATCCTATTTGCTTCTTTGTG
LOC_Os04g34630
Os.5130.1.S1_at--339--4911Chr04:20768289..20768313 (25 bp)
GCTTCTTTGTGTTTTGCATGTTGAT
LOC_Os04g34630
Os.5130.1.S1_at--589--10331Chr04:20768377..20768401 (25 bp)
TTTCATGTGTGTAATTCCTCCTGCA
LOC_Os04g34630
Os.5130.1.S1_at--926--7071Chr04:20768387..20768411 (25 bp)
GTAATTCCTCCTGCAAATGTATCAA
LOC_Os04g34630
Target Sequence 
GACGGGAAGCCGGACTTCACCCTGAACCCGGCGTACGCGGCGGAGCTCCGGGAGCGGTGCCCGAGCTCCGGCGGCGACCA
GAACCTGTTCGCGCTGGACCCGGCCAGCCAGTTCCGGTTCGACAATCAGTACTACCGCAACATCCTCGCCATGAACGGCC
TCCTCAGCTCCGACGAGGTGCTCCTCACCAAGAGCCGGGAGACGATGGAGCTCGTCCACCGCTACGCCGCCAGCAACGAG
CTCTTCTTCGCGCAGTTCGCCAAGTCCATGGTCAAGATGGGCAGCATCTCCCCGCTCACCGGCCACAACGGCGAGATCAG
GATGAACTGCAGGAGGGTCAACCACTTCTAGAACCCTTCCACGTACGTACGGCGCCCACGGCCGATCGATGTGATGTGAT
GTGATCCTATTTGCTTCTTTGTGTTTTGCATGTTGATTTTATGATTTGTGTTTTGTATTTTGCTTTGCTTTGCTGCTCGC
TTAATTGTTNATATTAGTTTTTTCATGTGTGTAATTCCTCCTGCAAATGTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis