Browse Element(s) Details


Os.53865.1.S1_x_at

Description gb:AK100500.1
DB_XREF= gi:32985709
TID=Os.53865.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099G24, full insert sequence.
FL= gb:AK100500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3461011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34570OsAffx.26327.3.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_s_at8/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.16519.1.S1_at3/114+20727524..20733043expressed protein
LOC_Os04g34580OsAffx.26328.1.S1_at11/114+20736777..20737918FAD binding domain containing protein, expressed
LOC_Os04g34590OsAffx.11069.5.S1_x_at11/114+20738513..20741527hypothetical protein
LOC_Os04g34600Os.15942.4.S1_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.1.S1_s_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.5.S1_x_at10/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.53912.1.S1_x_at4/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34610Os.23113.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_x_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_x_at11/114+20762269..20765400expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_at11/114+20762269..20765400expressed protein
LOC_Os04g34620Os.20989.1.S1_at10/114+20762269..20765400expressed protein
LOC_Os04g34630Os.5130.1.S1_at11/114+20767108..20768449Peroxidase 72 precursor, putative, expressed
LOC_Os04g34640OsAffx.14137.1.S1_at11/114+20769808..20770973hypothetical protein
LOC_Os04g34640OsAffx.10222.1.S1_x_at1/114+20769808..20770973hypothetical protein
LOC_Os04g34650OsAffx.14902.1.A1_at3/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34650Os.27632.1.S1_at1/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34659OsAffx.27736.1.S1_at7/114+20778305..20778545NA
LOC_Os04g34670Os.8207.1.S1_at11/114+20779783..20785748tRNA-splicing endonuclease positive effector, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53865.1.S1_x_at--205--8511Chr04:20757929..20757953 (25 bp)
TGGCAAGCCCTTGTTATCTTTATCG
LOC_Os04g34610
Os.53865.1.S1_x_at--909--10151Chr04:20757915..20757939 (25 bp)
TATCTTTATCGTTGCAGTGCTGGCC
LOC_Os04g34610
Os.53865.1.S1_x_at--796--1111Chr04:20757900..20757924 (25 bp)
AGTGCTGGCCATTTTTAGCCCAAGG
LOC_Os04g34610
Os.53865.1.S1_x_at--392--8251Chr04:20757877..20757901 (25 bp)
GGCTTACCCTGCCTGGAAAAGATAA
LOC_Os04g34610
Os.53865.1.S1_x_at--454--3571Chr04:20757845..20757869 (25 bp)
CATAGATTTCAGTTGGCTTGGTCCA
LOC_Os04g34610
Os.53865.1.S1_x_at--617--9631Chr04:20757812..20757836 (25 bp)
TCAGGCTTTCCAGCTTTCTGAGGAA
LOC_Os04g34610
Os.53865.1.S1_x_at--1094--5311Chr04:20757790..20757814 (25 bp)
GAAGATTCTTTCAACCTTTCTGGTA
LOC_Os04g34610
Os.53865.1.S1_x_at--15--1351Chr04:20757731..20757755 (25 bp)
AGAGTGCATTCTGAGCTTAGCTGTT
LOC_Os04g34610
Os.53865.1.S1_x_at--1053--7131Chr04:20757552..20757576 (25 bp)
GTCTTTATCAAGGTGAGCAGCTTAC
LOC_Os04g34610
Os.53865.1.S1_x_at--377--5051Chr04:20757484..20757508 (25 bp)
GCAGAACTTATCAGCAATTTTTGTC
LOC_Os04g34610
Os.53865.1.S1_x_at--102--3511Chr04:20757447..20757471 (25 bp)
CATGGATGCTATTAACGTTTTCTGT
LOC_Os04g34610
Target Sequence 
TGGCAAGCCCTTGTTATCTTTATCGTTGCAGTGCTGGCCATTTTTAGCCCAAGGCTTACCCTGCCTGGAAAAGATAAAGA
ACCCCATAGATTTCAGTTGGCTTGGTCCAGCAATATTTCAGGCTTTCCAGCTTTCTGAGGAAGATTCTTTCAACCTTTCT
GGTAAACATGCGCCAGCAACTCTCATCGAGCAACAGAAAGAGTGCATTCTGAGCTTAGCTGTTTGCTGCATCACCTACAG
CAAATACCTTGCAAGTATATGCTATGGTCCAGAACATTATTTGGCAAATCGTGCTAAAGATCTGCTTGAATGTATCAATC
ATGTACAATGATCTCTCTGTGATATATCTCTGGAGCTGATGTTTGATGTGCTCTATTGTCTTTATCAAGGTGAGCAGCTT
ACTTTTAAGATTGTTGTAGGACTGAACTGATAGTTTCTTTTACAAGCAGAACTTATCAGCAATTTTTGTCAAGGGGGAGT
TACATGGATGCTATTAACGTTTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53865.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis