Browse Element(s) Details


Os.8207.1.S1_at

Description gb:CB096959
DB_XREF= gi:27921151
DB_XREF=AF53-Rpf_10_B12_T7_034.ab1
CLONE=C0003492
TID=Os.8207.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative component of a tRNA splicing complex (OSJNBa0051C19.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3467011/11tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os06g2050011/11expressed protein
LOC_Os03g325262/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34610Os.23113.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_x_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_x_at11/114+20762269..20765400expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_at11/114+20762269..20765400expressed protein
LOC_Os04g34620Os.20989.1.S1_at10/114+20762269..20765400expressed protein
LOC_Os04g34630Os.5130.1.S1_at11/114+20767108..20768449Peroxidase 72 precursor, putative, expressed
LOC_Os04g34640OsAffx.14137.1.S1_at11/114+20769808..20770973hypothetical protein
LOC_Os04g34640OsAffx.10222.1.S1_x_at1/114+20769808..20770973hypothetical protein
LOC_Os04g34650OsAffx.14902.1.A1_at3/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34650Os.27632.1.S1_at1/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34659OsAffx.27736.1.S1_at7/114+20778305..20778545NA
LOC_Os04g34670Os.8207.1.S1_at11/114+20779783..20785748tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g34680OsAffx.29169.1.S1_at5/114+20788986..20790931retrotransposon protein, putative, unclassified
LOC_Os04g34680OsAffx.29169.3.S1_at5/114+20788986..20790931retrotransposon protein, putative, unclassified
LOC_Os04g34699NANA4+20803967..20807644hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8207.1.S1_at--142--10213Chr04:20785109..20785215 (25 bp)
TATTTCCAGGTTCCGAAGCCATTCA
LOC_Os04g34670
Os.8207.1.S1_at--684--5473Chr04:20785326..20785350 (25 bp)
GAACTCATGGATGTCGACGATGCTG
LOC_Os04g34670
Os.8207.1.S1_at--230--7553Chr04:20785402..20785426 (25 bp)
GTGGCGGCGATGACTAACCATTCAC
LOC_Os04g34670
Os.8207.1.S1_at--1147--1033Chr04:20785464..20785488 (25 bp)
AGGTGGACTTGGATGCTGGACCCCA
LOC_Os04g34670
Os.8207.1.S1_at--399--3433Chr04:20785497..20785521 (25 bp)
CAGGGCCTTTAGTTGAGCCTTCGAA
LOC_Os04g34670
Os.8207.1.S1_at--344--3153Chr04:20785527..20785551 (25 bp)
AATTCAGTGCCGTGATTCTTTGCTA
LOC_Os04g34670
Os.8207.1.S1_at--647--6573Chr04:20785540..20785564 (25 bp)
GATTCTTTGCTATTTCGGGTGCGAG
LOC_Os04g34670
Os.8207.1.S1_at--764--1233Chr04:20785589..20785613 (25 bp)
AGTTGCAGGCATAGCTACATCTTAT
LOC_Os04g34670
Os.8207.1.S1_at--440--6913Chr04:20785626..20785650 (25 bp)
GTATGTATACAAAGCCCCTTGCACC
LOC_Os04g34670
Os.8207.1.S1_at--131--1612Chr04:20785656..20785680 (25 bp)
AGCTGAAAACTGCTCAACTGGCTTT
LOC_Os04g34670
Os.8207.1.S1_at--957--4693Chr04:20785690..20785714 (25 bp)
GCGGCTATAATTTTGCACGGCAGTT
LOC_Os04g34670
Target Sequence 
TATTTCCAGGTTCCGAAGCCATTCACCGCATTCTTTGTGGATGATAAGCTGAAAACCATGAAAGTGGAGAGAGCTCCTCC
GGAGCTGAGGACTGTGCAAGCATTGGAAGCAATAAACGAAGCAGTTGTAGGGCAAGAACTCATGGATGTCGACGATGCTG
GCGACCAAGAGGATGAAGGGTATGATGATGATCCCGTGGAGGCTGATGATGGTGGCGGCGATGACTAACCATTCACTACC
ACATAGAGGTATGTAGAAGAGCAACATTTGTTTAGGTGGACTTGGATGCTGGACCCCAGCCACAGCCAGGGCCTTTAGTT
GAGCCTTCGAATTACAAATTCAGTGCCGTGATTCTTTGCTATTTCGGGTGCGAGAGGTGGCTGAATGCCTGAGTTCATAG
TTGCAGGCATAGCTACATCTTATGTTTTAAGTTATGTATGTATACAAAGCCCCTTGCACCAAAAGAGCTGAAAACTGCTC
AACTGGCTTTAATTTGTCTGCGGCTATAATTTTGCACGGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis