Browse Element(s) Details


OsAffx.14137.1.S1_at

Description tigr:9632.m03330
TID=OsAffx.14137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3464011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34600Os.15942.4.S1_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.1.S1_s_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.5.S1_x_at10/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.53912.1.S1_x_at4/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34610Os.23113.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_x_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_x_at11/114+20762269..20765400expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_at11/114+20762269..20765400expressed protein
LOC_Os04g34620Os.20989.1.S1_at10/114+20762269..20765400expressed protein
LOC_Os04g34630Os.5130.1.S1_at11/114+20767108..20768449Peroxidase 72 precursor, putative, expressed
LOC_Os04g34640OsAffx.14137.1.S1_at11/114+20769808..20770973hypothetical protein
LOC_Os04g34640OsAffx.10222.1.S1_x_at1/114+20769808..20770973hypothetical protein
LOC_Os04g34650OsAffx.14902.1.A1_at3/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34650Os.27632.1.S1_at1/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34659OsAffx.27736.1.S1_at7/114+20778305..20778545NA
LOC_Os04g34670Os.8207.1.S1_at11/114+20779783..20785748tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g34680OsAffx.29169.1.S1_at5/114+20788986..20790931retrotransposon protein, putative, unclassified
LOC_Os04g34680OsAffx.29169.3.S1_at5/114+20788986..20790931retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14137.1.S1_at--724--7111Chr04:20770733..20770757 (25 bp)
GTCAGCACGCCGCTGTGTAGGCACC
LOC_Os04g34640
OsAffx.14137.1.S1_at--854--5311Chr04:20770650..20770674 (25 bp)
GAAGTGGAGTGTGGAGGTCCCCGCC
LOC_Os04g34640
OsAffx.14137.1.S1_at--1063--4691Chr04:20770617..20770641 (25 bp)
GCGGCTGCACGAGTCCAGCATCAAG
LOC_Os04g34640
OsAffx.14137.1.S1_at--505--3851Chr04:20770613..20770637 (25 bp)
CTGCACGAGTCCAGCATCAAGGGCA
LOC_Os04g34640
OsAffx.14137.1.S1_at--865--4351Chr04:20770530..20770554 (25 bp)
GCCAGAGGACATGACGTCATCGTCG
LOC_Os04g34640
OsAffx.14137.1.S1_at--337--9151Chr04:20770490..20770514 (25 bp)
TGCGTATCCCTTCGTTGCGACATCG
LOC_Os04g34640
OsAffx.14137.1.S1_at--361--674Chr11:16489540..16489618 (25 bp)
ATGAACTGGATCGATCCCCTTGCAA
NONE
OsAffx.14137.1.S1_at--457--6391Chr04:20770353..20770377 (25 bp)
GATCGATCCCCTTGCAACCGGTGAG
LOC_Os04g34640
OsAffx.14137.1.S1_at--491--9013Chr11:16489565..16489584 (20 bp)
TGCAACCGGTGAGCAAGGGCAATTT
NONE
OsAffx.14137.1.S1_at--166--2671Chr04:20770307..20770331 (25 bp)
AAGCCGCATTCCAGTGAAAATGCAC
LOC_Os04g34640
OsAffx.14137.1.S1_at--21--2291Chr04:20770290..20770314 (25 bp)
AAATGCACAAAATAGCCAATATGGC
LOC_Os04g34640
Target Sequence 
GTCAGCACGCCGCTGTGTAGGCACCAGCGCCCCGGTGGCAGCCCGTTGACGAGGATCGCGCAGATGCTCGTCGTGTCGGC
GAGGAAGTGGAGTGTGGAGGTCCCCGCCGACAGGTCGCGGCTGCACGAGTCCAGCATCAAGGGCAGCCACAAGCTGGAGC
ACACCAAGCAGTTCGCGTGCCTTGACAGGGCGGCGGTGGAGACGCCAGAGGACATGACGTCATCGTCGTCGGCGTGGAGG
CCGTGCGTATCCCTTCGTTGCGACATCGCCATGCCCGCGTCGCCATCGTCGCCGCCGCTGCCATGTTTTCGCTCGCCGCC
TCCTCCATTTCGGCCACGCGGACCACCTCGCCGCACTCGTCCTCTTCCTCCCATGAACTGGATCGATCCCCTTGCAACCG
GTGAGCAAGGGCAATTTGGTCTCATCAAGCCGCATTCCAGTGAAAATGCACAAAATAGCCAATATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis