Browse Element(s) Details


Os.20989.1.S1_at

Description gb:CB096804
DB_XREF= gi:27920996
DB_XREF=AF53-Rpf_08_P19_T7_080.ab1
CLONE=C0003067
TID=Os.20989.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.20989 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564484.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3462010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34580OsAffx.26328.1.S1_at11/114+20736777..20737918FAD binding domain containing protein, expressed
LOC_Os04g34590OsAffx.11069.5.S1_x_at11/114+20738513..20741527hypothetical protein
LOC_Os04g34600Os.15942.4.S1_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.1.S1_s_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.5.S1_x_at10/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.53912.1.S1_x_at4/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34610Os.23113.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_x_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_x_at11/114+20762269..20765400expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_at11/114+20762269..20765400expressed protein
LOC_Os04g34620Os.20989.1.S1_at10/114+20762269..20765400expressed protein
LOC_Os04g34630Os.5130.1.S1_at11/114+20767108..20768449Peroxidase 72 precursor, putative, expressed
LOC_Os04g34640OsAffx.14137.1.S1_at11/114+20769808..20770973hypothetical protein
LOC_Os04g34640OsAffx.10222.1.S1_x_at1/114+20769808..20770973hypothetical protein
LOC_Os04g34650OsAffx.14902.1.A1_at3/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34650Os.27632.1.S1_at1/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34659OsAffx.27736.1.S1_at7/114+20778305..20778545NA
LOC_Os04g34670Os.8207.1.S1_at11/114+20779783..20785748tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g34680OsAffx.29169.1.S1_at5/114+20788986..20790931retrotransposon protein, putative, unclassified
LOC_Os04g34680OsAffx.29169.3.S1_at5/114+20788986..20790931retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20989.1.S1_at--1129--1711Chr04:20762505..20762529 (25 bp)
ACCAGCGACGGGTGATTTCAGCTAC
LOC_Os04g34620
Os.20989.1.S1_at--223--5751Chr04:20762499..20762523 (25 bp)
GACGGGTGATTTCAGCTACTAGCTT
LOC_Os04g34620
Os.20989.1.S1_at--578--4851Chr04:20762485..20762509 (25 bp)
GCTACTAGCTTTCTTGGAATCCTCT
LOC_Os04g34620
Os.20989.1.S1_at--152--10871Chr04:20762472..20762496 (25 bp)
TTGGAATCCTCTGAATGTCAACCCC
LOC_Os04g34620
Os.20989.1.S1_at--794--6831Chr04:20762425..20762449 (25 bp)
GTTTCTCTAGATTCAGATCCTTGAG
LOC_Os04g34620
Os.20989.1.S1_at--735--1291Chr04:20762411..20762435 (25 bp)
AGATCCTTGAGTGTTGCTTGTTGTA
LOC_Os04g34620
Os.20989.1.S1_at--749--6111Chr04:20762403..20762427 (25 bp)
GAGTGTTGCTTGTTGTAGGATGCAT
LOC_Os04g34620
Os.20989.1.S1_at--291--1611NONE
AGCTGAGTGAGTGCCGATAGGATTC
NONE
Os.20989.1.S1_at--269--10531Chr04:20762333..20762357 (25 bp)
TTCAGAGTTTCAGACCGATGGCGTA
LOC_Os04g34620
Os.20989.1.S1_at--905--1771Chr04:20762320..20762344 (25 bp)
ACCGATGGCGTATGTTTTGGGCGAA
LOC_Os04g34620
Os.20989.1.S1_at--1111--4591Chr04:20762300..20762324 (25 bp)
GCGAAAGTAGCTTTTTGCAGCTGTA
LOC_Os04g34620
Target Sequence 
ACCAGCGACGGGTGATTTCAGCTACTAGCTTTCTTGGAATCCTCTGAATGTCAACCCCCTTTTTCCANGGGTTATAGTGN
TTGTTTCTCTAGATTCAGATCCTTGAGTGTTGCTTGTTGTAGGATGCATGGNTTTTAACNANGAGATNGTAACNTTGAGC
TGAGTGAGTGCCGATAGGATTCAGAGTTTCAGACCGATGGCGTATGTTTTGGGCGAAAGTAGCTTTTTGCAGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis