Browse Element(s) Details


Os.27632.1.S1_at

Description gb:AK099862.1
DB_XREF= gi:32985071
TID=Os.27632.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019E03.9 (P0019E03.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111A08, full insert sequence.
FL= gb:AK099862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4887410/11condensation domain-containing protein, putative, expressed
LOC_Os04g346501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein
LOC_Os01g48830Os.31693.2.S1_at11/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.4.S1_x_at10/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.3.S1_at9/111+28343118..28348261expressed protein
LOC_Os01g48840OsAffx.11523.1.S1_at11/111+28354377..28355274hypothetical protein
LOC_Os01g48850Os.34998.1.S1_x_at10/111+28355641..28358553auxin-responsive protein, putative, expressed
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48900Os.41711.1.S1_at11/111+28382038..28387289Dynamin-related protein 1A, putative, expressed
LOC_Os01g48910Os.22710.1.S1_a_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48910Os.22710.2.S1_x_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48920Os.24872.1.S1_at11/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48920Os.24872.2.S1_at3/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27632.1.S1_at--762--3011Chr01:28360240..28360264 (25 bp)
AATGCATTGGCAGAGCTACATGAAC
LOC_Os01g48874
Os.27632.1.S1_at--108--2711Chr01:28360209..28360233 (25 bp)
AAGCTAGCCCTTGCTGTAGATGAGA
LOC_Os01g48874
Os.27632.1.S1_at--293--1313Chr05:29590100..29590171 (24 bp)
AGATGAGACACAGTTTCCAGATGCT
NONE
Os.27632.1.S1_at--446--691Chr01:28360166..28360190 (25 bp)
ATGAGCTACTGGATGACTTCACCGA
LOC_Os01g48874
Os.27632.1.S1_at--543--2051Chr01:28360151..28360175 (25 bp)
ACTTCACCGAGTCCATGAGGCTCAT
LOC_Os01g48874
Os.27632.1.S1_at--541--8311Chr01:28360133..28360157 (25 bp)
GGCTCATCCGGGAGGCAGCTTCAAG
LOC_Os01g48874
Os.27632.1.S1_at--812--3471Chr01:28360092..28360116 (25 bp)
CAGGATGGTCCTTAAGTGTACAAAT
LOC_Os01g48874
Os.27632.1.S1_at--812--5591Chr01:28359880..28359904 (25 bp)
GAAATTACACATCCACTGTCTGCAA
LOC_Os01g48874
Os.27632.1.S1_at--966--8711Chr01:28359864..28359888 (25 bp)
TGTCTGCAAAATTCCTCCCTTTGAC
LOC_Os01g48874
Os.27632.1.S1_at--534--9311Chr01:28359849..28359873 (25 bp)
TCCCTTTGACTCCTGCCATATAGGG
LOC_Os01g48874
Os.27632.1.S1_at--475--2091Chr01:28359713..28359737 (25 bp)
ACATCTTCTGATGAATTCCTACGGG
NONE
Target Sequence 
AATGCATTGGCAGAGCTACATGAACACTATAAAGCTAGCCCTTGCTGTAGATGAGACACAGTTTCCAGATGCTCATGAGC
TACTGGATGACTTCACCGAGTCCATGAGGCTCATCCGGGAGGCAGCTTCAAGAGGGACAGACAAAGCACAGGATGGTCCT
TAAGTGTACAAATGTCGAATATATGCAAAAGAAAATTGCTGAAGATGATTGATGTATTGTAATTCTGAGTTCAATTCTTT
GTAAAGGATAGAAGGATCTATACCAAATCAAAGTATGGAAGGAAGAAGAAGAATTAGATCTTAAGGGGAAAAGGAAGAAG
AGTATACAGAAACAGGTATTCTCATACTATTAGTTATACAGAAATTACACATCCACTGTCTGCAAAATTCCTCCCTTTGA
CTCCTGCCATATAGGGGCGATATGAGAGCTGCTCATATTCAAGTATTCAGAACAGNNGNNCATATAATACAGCAGAACAG
TTAGACANAAAAACAGAGACTATTCTATATCTTTCTTTAAATGTTATACATCTTCTGATGAATTCCTACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis