Browse Element(s) Details


Os.22710.1.S1_a_at

Description gb:AK066286.1
DB_XREF= gi:32976304
TID=Os.22710.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acyl-CoA synthetase (P0019E03.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065D12, full insert sequence.
FL= gb:AK066286.1 gb:AK101149.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4891011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48900Os.41711.1.S1_at11/111+28382038..28387289Dynamin-related protein 1A, putative, expressed
LOC_Os01g48910Os.22710.1.S1_a_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48910Os.22710.2.S1_x_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48920Os.24872.1.S1_at11/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48920Os.24872.2.S1_at3/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48930Os.10135.1.S1_at11/111+28407240..28410229expressed protein
LOC_Os01g48940OsAffx.23719.1.S1_at11/111+28411109..28413257expressed protein
LOC_Os01g48940Os.46029.1.A1_at11/111+28411109..28413257expressed protein
LOC_Os01g48950Os.35583.1.S1_at10/111+28415247..28415951expressed protein
LOC_Os01g48960Os.12738.1.S1_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48960Os.12738.1.S2_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0010143biological_processcutin biosynthesis
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22710.1.S1_a_at--685--10811Chr01:28389311..28389335 (25 bp)
TTGGGAGAATTAACCAAGACTGGTA
LOC_Os01g48910
Os.22710.1.S1_a_at--120--10271Chr01:28389179..28389203 (25 bp)
TTTGAGCTCATCAGGGCTGTTCATC
LOC_Os01g48910
Os.22710.1.S1_a_at--258--9651Chr01:28389169..28389193 (25 bp)
TCAGGGCTGTTCATCTGGAGCCAGT
LOC_Os01g48910
Os.22710.1.S1_a_at--867--8791Chr01:28389162..28389186 (25 bp)
TGTTCATCTGGAGCCAGTGCCATTC
LOC_Os01g48910
Os.22710.1.S1_a_at--281--5871Chr01:28389152..28389176 (25 bp)
GAGCCAGTGCCATTCGATATGGATC
LOC_Os01g48910
Os.22710.1.S1_a_at--1002--4431Chr01:28389144..28389168 (25 bp)
GCCATTCGATATGGATCGTGACCTA
LOC_Os01g48910
Os.22710.1.S1_a_at--747--5371Chr01:28389102..28389126 (25 bp)
GAAGAAGCGGCCACAGCTGCTCAAA
LOC_Os01g48910
Os.22710.1.S1_a_at--632--5411Chr01:28389099..28389123 (25 bp)
GAAGCGGCCACAGCTGCTCAAATAT
LOC_Os01g48910
Os.22710.1.S1_a_at--285--9091Chr01:28388985..28389109 (25 bp)
TGCTCAAATATTACCAGAACGTCAT
LOC_Os01g48910
Os.22710.1.S1_a_at--154--231Chr01:28388978..28389102 (25 bp)
ATATTACCAGAACGTCATCGACAGC
LOC_Os01g48910
Os.22710.1.S1_a_at--439--7131Chr01:28388965..28388989 (25 bp)
GTCATCGACAGCATGTATAAGAACA
LOC_Os01g48910
Target Sequence 
TTGGGAGAATTAACCAAGACTGGTAAAGAAAAGAAGCTCAAAGGCTTTGAGCTCATCAGGGCTGTTCATCTGGAGCCAGT
GCCATTCGATATGGATCGTGACCTAATTNCCCCAACTTACAAGAAGAAGCGGCCACAGCTGCTCAAATATTACCAGAACG
TCATCGACAGCATGTATAAGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22710.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis