Browse Element(s) Details


Os.12738.1.S1_a_at

Description gb:AK105755.1
DB_XREF= gi:32990964
TID=Os.12738.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019E03.17 (P0019E03.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C08, full insert sequence.
FL= gb:AK105755.1 gb:AB008845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4896011/11Glutamate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48910Os.22710.1.S1_a_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48910Os.22710.2.S1_x_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48920Os.24872.1.S1_at11/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48920Os.24872.2.S1_at3/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48930Os.10135.1.S1_at11/111+28407240..28410229expressed protein
LOC_Os01g48940OsAffx.23719.1.S1_at11/111+28411109..28413257expressed protein
LOC_Os01g48940Os.46029.1.A1_at11/111+28411109..28413257expressed protein
LOC_Os01g48950Os.35583.1.S1_at10/111+28415247..28415951expressed protein
LOC_Os01g48960Os.12738.1.S1_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48960Os.12738.1.S2_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48970OsAffx.23720.1.S1_at10/111+28436506..28440607hypothetical protein
LOC_Os01g48980Os.17811.1.S1_at11/111+28444944..28450141GPI transamidase component family protein, putative, expressed
LOC_Os01g48990Os.7712.1.S1_a_at11/111+28453423..28457125Kinase C630.09c, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006537biological_processglutamate biosynthesis
GO:0009853biological_processphotorespiration
GO:0042128biological_processnitrate assimilation
GO:0009536cellular_componentplastid
GO:0009055molecular_functionelectron carrier activity
GO:0016040molecular_functionglutamate synthase (NADH) activity
GO:0016041molecular_functionglutamate synthase (ferredoxin) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12738.1.S1_a_at--306--131Chr01:28426282..28426307 (25 bp)
ATTCAGGTGCTTTCGATGGTGTTCT
LOC_Os01g48960
Os.12738.1.S1_a_at--4--9591Chr01:28426260..28426284 (25 bp)
TCTTGAACTTCTTATCCGTGGTGGA
LOC_Os01g48960
Os.12738.1.S1_a_at--646--5411Chr01:28426234..28426258 (25 bp)
GAAGCCTGCCAGAAGCTGTGATGAT
LOC_Os01g48960
Os.12738.1.S1_a_at--16--711Chr01:28426150..28426174 (25 bp)
ATGAGTTCTTGTCTGCCCTTATGGA
LOC_Os01g48960
Os.12738.1.S1_a_at--598--7651Chr01:28426121..28426144 (24 bp)
GGGATGGACCTGCTCTAATATCTTT
LOC_Os01g48960
Os.12738.1.S1_a_at--1033--231Chr01:28426021..28426127 (25 bp)
ATATCTTTTACTGATGGCCGTTACC
LOC_Os01g48960
Os.12738.1.S1_a_at--93--10871Chr01:28425996..28426020 (25 bp)
TTGGAGCCACCCTGGATCGCAATGG
LOC_Os01g48960
Os.12738.1.S1_a_at--151--8631Chr01:28425974..28425998 (25 bp)
TGGGTTGAGGCCTGGTCGATTTTAT
LOC_Os01g48960
Os.12738.1.S1_a_at--97--7752Chr11:9330314..9330333 (20 bp)
GGTGTTGTTGATGTTCCTTCCAAAG
NONE
Os.12738.1.S1_a_at--662--2931Chr01:28425799..28425823 (25 bp)
AAGGCACAGTACTCGAAAGCTCACC
LOC_Os01g48960
Os.12738.1.S1_a_at--314--4791Chr01:28425697..28425721 (25 bp)
GCTCCTGGAATTTCTGGTTCACTCA
LOC_Os01g48960
Target Sequence 
ATTCAGGTGCTTTCGATGGTGTTCTTGAACTTCTTATCCGTGGTGGAAGAAGCCTGCCAGAAGCTGTGATGATGATGATA
CCTGAGGCATGGCAGAACGATGTGAACATGGAACCTGAGAAGAAAGCTCTCTATGAGTTCTTGTCTGCCCTTATGGAGCC
TTGGGATGGACCTGCTCTAATATCTTTTACTGATGGCCGTTACCTTGGAGCCACCCTGGATCGCAATGGGTTGAGGCCTG
GTCGATTTTATGTGACACACAGTGGACGTGTAGTCATGGGAAGTGAAGTTGGTGTTGTTGATGTTCCTTCCAAAGATGTA
TTGAGAAAGGGTAGACTAAACCCTGGAATGATGCTGTTGGTTGATTTTGAGAACCATACTGTAGTGGATGATGAAGCATT
GAAGGCACAGTACTCGAAAGCTCACCCATATGGGGAGTGGCTCAAGAGACAAAAAATATACCTCAAAGACATTGTAGAAT
CTGTGCCAGAAACTGAGAGAGTTGCTCCTGGAATTTCTGGTTCACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12738.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis