Browse Element(s) Details


OsAffx.23720.1.S1_at

Description tigr:9629.m04724
TID=OsAffx.23720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4897010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48940OsAffx.23719.1.S1_at11/111+28411109..28413257expressed protein
LOC_Os01g48940Os.46029.1.A1_at11/111+28411109..28413257expressed protein
LOC_Os01g48950Os.35583.1.S1_at10/111+28415247..28415951expressed protein
LOC_Os01g48960Os.12738.1.S1_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48960Os.12738.1.S2_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48970OsAffx.23720.1.S1_at10/111+28436506..28440607hypothetical protein
LOC_Os01g48980Os.17811.1.S1_at11/111+28444944..28450141GPI transamidase component family protein, putative, expressed
LOC_Os01g48990Os.7712.1.S1_a_at11/111+28453423..28457125Kinase C630.09c, putative, expressed
LOC_Os01g49000Os.26940.1.S1_at11/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49000Os.52574.2.S1_x_at1/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23720.1.S1_at--79--7351Chr01:28436557..28436581 (25 bp)
GTGCACCGCTGCACGTGGTCTGCAG
LOC_Os01g48970
OsAffx.23720.1.S1_at--355--3351Chr01:28436568..28436592 (25 bp)
CACGTGGTCTGCAGTTGTTGCTCTA
LOC_Os01g48970
OsAffx.23720.1.S1_at--46--9011Chr01:28436577..28436601 (25 bp)
TGCAGTTGTTGCTCTAGACCCACTT
LOC_Os01g48970
OsAffx.23720.1.S1_at--3--3711Chr01:28436590..28436614 (25 bp)
CTAGACCCACTTGGCAATTTTGCTG
LOC_Os01g48970
OsAffx.23720.1.S1_at--976--7671NONE
GGGTCAATTTAGGAAGGGTCTGCAT
NONE
OsAffx.23720.1.S1_at--1025--5311Chr01:28440222..28440246 (25 bp)
GAAGGGTCTGCATCCTTTGGAGGCA
LOC_Os01g48970
OsAffx.23720.1.S1_at--497--9251Chr01:28440234..28440499 (25 bp)
TCCTTTGGAGGCAGCCAAGATTATT
LOC_Os01g48970
OsAffx.23720.1.S1_at--432--5951Chr01:28440500..28440524 (25 bp)
GAGCAAACAAACAAGTCCATATTCT
LOC_Os01g48970
OsAffx.23720.1.S1_at--865--7251Chr01:28440514..28440538 (25 bp)
GTCCATATTCTCTTTAAGCCCTGAT
LOC_Os01g48970
OsAffx.23720.1.S1_at--515--2671Chr01:28440529..28440553 (25 bp)
AAGCCCTGATTTATTATTGCCTCAC
LOC_Os01g48970
OsAffx.23720.1.S1_at--75--191Chr01:28440537..28440561 (25 bp)
ATTTATTATTGCCTCACGGCCTCGA
LOC_Os01g48970
Target Sequence 
GTGCACCGCTGCACGTGGTCTGCAGTTGTTGCTCTAGACCCACTTGGCAATTTTGCTGGGGACACCCCGGAATGGGGTCA
ATTTAGGAAGGGTCTGCATCCTTTGGAGGCAGCCAAGATTATTGAGCAAACAAACAAGTCCATATTCTCTTTAAGCCCTG
ATTTATTATTGCCTCACGGCCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis