Browse Element(s) Details


Os.46029.1.A1_at

Description gb:CF324859
DB_XREF= gi:33797998
DB_XREF=JMT1--01-K16.g1
CLONE=JMT1--01-K16
TID=Os.46029.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.46029 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4894011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48900Os.41711.1.S1_at11/111+28382038..28387289Dynamin-related protein 1A, putative, expressed
LOC_Os01g48910Os.22710.1.S1_a_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48910Os.22710.2.S1_x_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48920Os.24872.1.S1_at11/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48920Os.24872.2.S1_at3/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48930Os.10135.1.S1_at11/111+28407240..28410229expressed protein
LOC_Os01g48940OsAffx.23719.1.S1_at11/111+28411109..28413257expressed protein
LOC_Os01g48940Os.46029.1.A1_at11/111+28411109..28413257expressed protein
LOC_Os01g48950Os.35583.1.S1_at10/111+28415247..28415951expressed protein
LOC_Os01g48960Os.12738.1.S1_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48960Os.12738.1.S2_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48970OsAffx.23720.1.S1_at10/111+28436506..28440607hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46029.1.A1_at--102--6031Chr01:28412891..28412915 (25 bp)
GAGAGGTAGCTATGCATACTGCCAT
LOC_Os01g48940
Os.46029.1.A1_at--138--651Chr01:28412880..28412904 (25 bp)
ATGCATACTGCCATGTCTGAGCTTG
LOC_Os01g48940
Os.46029.1.A1_at--433--771Chr01:28412868..28412892 (25 bp)
ATGTCTGAGCTTGCACCTTCTGCAA
LOC_Os01g48940
Os.46029.1.A1_at--374--5091Chr01:28412856..28412880 (25 bp)
GCACCTTCTGCAAGCTTTGATCATG
LOC_Os01g48940
Os.46029.1.A1_at--498--9511Chr01:28412813..28412837 (25 bp)
TAATACTTTGTACCGTGACGTCGTA
LOC_Os01g48940
Os.46029.1.A1_at--310--3331Chr01:28412797..28412821 (25 bp)
GACGTCGTAATTGTGGTTTTGTAGC
LOC_Os01g48940
Os.46029.1.A1_at--656--10171Chr01:28412770..28412794 (25 bp)
TATACGTACGATTTTGCCTGGTCAC
LOC_Os01g48940
Os.46029.1.A1_at--169--7111Chr01:28412750..28412774 (25 bp)
GTCACCCGGCCATTGATCTGCTGTA
LOC_Os01g48940
Os.46029.1.A1_at--725--7491Chr01:28412707..28412731 (25 bp)
GTGGTGGCGACGTATATGTATATAG
LOC_Os01g48940
Os.46029.1.A1_at--743--6871Chr01:28412690..28412714 (25 bp)
GTATATAGTTCGTGACCTCGTGTTA
LOC_Os01g48940
Os.46029.1.A1_at--851--7371Chr01:28412679..28412703 (25 bp)
GTGACCTCGTGTTACGATCGAGTAA
LOC_Os01g48940
Target Sequence 
GAGAGGTAGCTATGCATACTGCCATGTCTGAGCTTGCACCTTCTGCAAGCTTTGATCATGGAGGAGGAGAAGATTAGTTA
ATACTTTGTACCGTGACGTCGTAATTGTGGTTTTGTAGCGATATACGTACGATTTTGCCTGGTCACCCGGCCATTGATCT
GCTGTACATATACGTAGTGGAAAAGTGGTGGCGACGTATATGTATATAGTTCGTGACCTCGTGTTACGATCGAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46029.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis