Browse Element(s) Details


Os.41711.1.S1_at

Description gb:NM_192052.1
DB_XREF= gi:34911187
GEN=P0019E03.10
TID=Os.41711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41711 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative dynamin-like protein (P0019E03.10), mRNA.
PROD=putative dynamin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4890011/11Dynamin-related protein 1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48850Os.34998.1.S1_x_at10/111+28355641..28358553auxin-responsive protein, putative, expressed
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48900Os.41711.1.S1_at11/111+28382038..28387289Dynamin-related protein 1A, putative, expressed
LOC_Os01g48910Os.22710.1.S1_a_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48910Os.22710.2.S1_x_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48920Os.24872.1.S1_at11/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48920Os.24872.2.S1_at3/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48930Os.10135.1.S1_at11/111+28407240..28410229expressed protein
LOC_Os01g48940OsAffx.23719.1.S1_at11/111+28411109..28413257expressed protein
LOC_Os01g48940Os.46029.1.A1_at11/111+28411109..28413257expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000266biological_processmitochondrial fission
GO:0000911biological_processcytokinesis by cell plate formation
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0010152biological_processpollen maturation
GO:0016192biological_processvesicle-mediated transport
GO:0005874cellular_componentmicrotubule
GO:0009504cellular_componentcell plate
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41711.1.S1_at--976--9631Chr01:28385736..28385930 (25 bp)
TCAGTGAGACAGATTATGGGAAAAC
LOC_Os01g48900
Os.41711.1.S1_at--668--6451Chr01:28385937..28385961 (25 bp)
GATCAAATCTATTGAGTCTCCTGCC
LOC_Os01g48900
Os.41711.1.S1_at--33--3071Chr01:28385942..28385966 (25 bp)
AATCTATTGAGTCTCCTGCCTACAG
LOC_Os01g48900
Os.41711.1.S1_at--298--9271Chr01:28385955..28385979 (25 bp)
TCCTGCCTACAGGACTTTGGCATTT
LOC_Os01g48900
Os.41711.1.S1_at--1021--2111Chr01:28385963..28385987 (25 bp)
ACAGGACTTTGGCATTTGTGTCATC
LOC_Os01g48900
Os.41711.1.S1_at--208--10831Chr01:28385978..28385998 (21 bp)
TTGTGTCATCGTTCAAACACGAGTT
LOC_Os01g48900
Os.41711.1.S1_at--461--6471Chr01:28386296..28386320 (25 bp)
GATACAATGATTCATACCTTAGACG
LOC_Os01g48900
Os.41711.1.S1_at--389--7011Chr01:28386548..28386572 (25 bp)
GTACTAATGTTCTGGCATATGTCAA
LOC_Os01g48900
Os.41711.1.S1_at--474--751Chr01:28386566..28386590 (25 bp)
ATGTCAATATGGTATGTTCAAGCTT
LOC_Os01g48900
Os.41711.1.S1_at--432--3691Chr01:28386611..28386635 (25 bp)
CTATTGTTTATTGCCAAGTCCGGGA
LOC_Os01g48900
Os.41711.1.S1_at--939--9191Chr01:28386622..28386646 (25 bp)
TGCCAAGTCCGGGAGGCAAAGCGCA
LOC_Os01g48900
Target Sequence 
TCAGTGAGACAGATTATGGGAAAACTATCAAGATCAAATCTATTGAGTCTCCTGCCTACAGGACTTTGGCATTTGTGTCA
TCGTTCAAACACGAGTTAAATCAATTCCCCACTCTCCGTGTGGAAATAAGCAATGCAGCTTTTGAATCATTGGACAGAAT
GCGGAATGAAAGCAAGAAAAGTACTCTGAAGCTGGTTGATATGGAGTGCAGCTATTTAACTGTTGATTTCTTTTGGAAGC
TTCCTCAGGATGTTGAGAAGGGTGGAAATCCAACAAACTCTATTTTTGACAGATACAATGATTCATACCTTAGACGAATT
AGTACTAATGTTCTGGCATATGTCAATATGGTATGTTCAAGCTTGAGAAACTCCATCCCTAAATCTATTGTTTATTGCCA
AGTCCGGGAGGCAAAGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis