Browse Element(s) Details


Os.34998.1.S1_x_at

Description gb:AK060690.1
DB_XREF= gi:32970708
TID=Os.34998.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019E03.5 (P0019E03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C01, full insert sequence.
FL= gb:AK060690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4885010/11auxin-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein
LOC_Os01g48830Os.31693.2.S1_at11/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.4.S1_x_at10/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.3.S1_at9/111+28343118..28348261expressed protein
LOC_Os01g48840OsAffx.11523.1.S1_at11/111+28354377..28355274hypothetical protein
LOC_Os01g48850Os.34998.1.S1_x_at10/111+28355641..28358553auxin-responsive protein, putative, expressed
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48900Os.41711.1.S1_at11/111+28382038..28387289Dynamin-related protein 1A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34998.1.S1_x_at--220--591Chr01:28356863..28356887 (25 bp)
ATCCAAGCAGATGTCCCGGCGCATA
LOC_Os01g48850
Os.34998.1.S1_x_at--621--231Chr01:28356827..28356851 (25 bp)
ATATTTGTGCTTGTGCTGGGTATCC
LOC_Os01g48850
Os.34998.1.S1_x_at--489--8631NONE
TGGGTATCCTGCAGATTCTGGCCTT
NONE
Os.34998.1.S1_x_at--401--1711Chr01:28356085..28356109 (25 bp)
ACCACCATTGGGTAGGCAGGCTTGC
LOC_Os01g48850
Os.34998.1.S1_x_at--1034--5071Chr01:28356050..28356074 (25 bp)
GCAGCCATCAACATTGTCCTTGGAA
LOC_Os01g48850
Os.34998.1.S1_x_at--636--5871Chr01:28356016..28356040 (25 bp)
GAGCCGCCGGCAACTCGTGGAAGAT
LOC_Os01g48850
Os.34998.1.S1_x_at--200--2811Chr01:28355996..28356020 (25 bp)
AAGATCGGCTATGGCTTCAACCTGG
LOC_Os01g48850
Os.34998.1.S1_x_at--648--151Chr01:28355954..28355978 (25 bp)
ATTATCACCCTGGAGGTCCTGCTAT
LOC_Os01g48850
Os.34998.1.S1_x_at--487--2151Chr01:28355908..28355932 (25 bp)
ACAGCAGTTCGATGCCAACATATTA
LOC_Os01g48850
Os.34998.1.S1_x_at--341--1011Chr01:28355869..28355893 (25 bp)
AGGTTGATCTTGTCGCTGTAACTTA
LOC_Os01g48850
Os.34998.1.S1_x_at--965--6331Chr01:28355789..28355813 (25 bp)
GATGCTGTTGCTTTGATGTTTCTGC
LOC_Os01g48850
Target Sequence 
ATCCAAGCAGATGTCCCGGCGCATAGGGGCCTTGGCATATTTGTGCTTGTGCTGGGTATCCTGCAGATTCTGGCCTTCTT
CCTAAGGCCTCACAAGGACTCAAAATATCGGAAATACTGGAACTGGTACCACCATTGGGTAGGCAGGCTTGCGCTCTTCT
TTGCAGCCATCAACATTGTCCTTGGAATCAAGGTCGGAGCCGCCGGCAACTCGTGGAAGATCGGCTATGGCTTCAACCTG
GCCATCCTCCTGATCACCATTATCACCCTGGAGGTCCTGCTATGGACAAGGTGGAAAAACAACAACAGCAGTTCGATGCC
AACATATTAAGTGTGATTAAATTAGGTTGATCTTGTCGCTGTAACTTATAACTGAAGGCCCTATTCTTCNATTAGTTTCT
TTTAATGGTTGTACCATTTGTGTGATGCTGTTGCTTTGATGTTTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34998.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis