Browse Element(s) Details


Os.31693.2.S1_at

Description gb:AK120014.1
DB_XREF= gi:37989637
TID=Os.31693.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019E03.4 (P0019E03.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-B05, full insert sequence.
FL= gb:AK120014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4883011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48800Os.29907.1.S1_at11/111+28322809..28324394expressed protein
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein
LOC_Os01g48830Os.31693.2.S1_at11/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.4.S1_x_at10/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.3.S1_at9/111+28343118..28348261expressed protein
LOC_Os01g48840OsAffx.11523.1.S1_at11/111+28354377..28355274hypothetical protein
LOC_Os01g48850Os.34998.1.S1_x_at10/111+28355641..28358553auxin-responsive protein, putative, expressed
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31693.2.S1_at--295--771Chr01:28344490..28344514 (25 bp)
ATGTGCTTTCCCAGGCAAATCTCAT
LOC_Os01g48830
Os.31693.2.S1_at--7--6131Chr01:28344430..28344454 (25 bp)
GAGTGTGCCACATGTCATAGCAGAA
LOC_Os01g48830
Os.31693.2.S1_at--791--2431Chr01:28344396..28344420 (25 bp)
AAAAGTCTTGGCCTCTTTCAGTATG
LOC_Os01g48830
Os.31693.2.S1_at--723--10051Chr01:28344293..28344317 (25 bp)
TAGTTCAGTGCTTAGCTGCGGGTGC
LOC_Os01g48830
Os.31693.2.S1_at--1023--3811Chr01:28344278..28344302 (25 bp)
CTGCGGGTGCGAGATTGTTGACAAC
LOC_Os01g48830
Os.31693.2.S1_at--130--8971Chr01:28344260..28344284 (25 bp)
TGACAACTTGATTATTCCGGACCTT
LOC_Os01g48830
Os.31693.2.S1_at--409--8671Chr01:28344066..28344090 (25 bp)
TGTGGTGCTGTCTTTTGATCTACTA
LOC_Os01g48830
Os.31693.2.S1_at--405--6411Chr01:28344050..28344074 (25 bp)
GATCTACTAGTCTGTTTTTCACCTT
LOC_Os01g48830
Os.31693.2.S1_at--43--3371Chr01:28344031..28344055 (25 bp)
CACCTTTTCCGTGATAGGGTCTTCA
LOC_Os01g48830
Os.31693.2.S1_at--68--7151Chr01:28344013..28344037 (25 bp)
GTCTTCAACTCATTCCCTTTGTTAT
LOC_Os01g48830
Os.31693.2.S1_at--325--10051Chr01:28343920..28343944 (25 bp)
TAGTAACAAGGCCAGCTCGAATCTT
LOC_Os01g48830
Target Sequence 
ATGTGCTTTCCCAGGCAAATCTCATTCAAGAACACTACAGTCACAACTCACAACAAACCAGAGTGTGCCACATGTCATAG
CAGAAAGAACAAAAAAAAGTCTTGGCCTCTTTCAGTATGGGGCCCAGCTGTCAGCCTCTTATCGTCCTTAGCTAAGCATG
AGAAAGAACTGTAGCATTATTACTACTTAGGTGGTGTTAGTTCAGTGCTTAGCTGCGGGTGCGAGATTGTTGACAACTTG
ATTATTCCGGACCTTGAAGGCTTGAATGCAAGTCGTCGTCGCTGACAAGTAGGGAAGGGCCAACGTGGAGACATGTATCT
GTGTCTTTTGTTAGGACCACATGATAATGTCTGGATAGAGCTTGGAATCATAACCATCGAAAAAGAGAAGAAAAAGAAAT
GGTACAAAGGGTTGGAAAAGAAATTGTGGTGCTGTCTTTTGATCTACTAGTCTGTTTTTCACCTTTTCCGTGATAGGGTC
TTCAACTCATTCCCTTTGTTATTAGGAGCATTCAAGCATGCTGTAGTTTAATGAGCTCCTGTAACATACTAACATGCATA
TATTTTCCAATAGTAACAAGGCCAGCTCGAATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31693.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis