Browse Element(s) Details


Os.21192.3.S1_x_at

Description gb:NM_192046.1
DB_XREF= gi:34911175
GEN=B1144G04.35
TID=Os.21192.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144G04.35 (B1144G04.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1144G04.35 (B1144G04.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g488209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48790Os.9641.1.S1_x_at11/111+28310536..28317230YT521-B-like family protein, expressed
LOC_Os01g48800Os.29907.1.S1_at11/111+28322809..28324394expressed protein
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein
LOC_Os01g48830Os.31693.2.S1_at11/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.4.S1_x_at10/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.3.S1_at9/111+28343118..28348261expressed protein
LOC_Os01g48840OsAffx.11523.1.S1_at11/111+28354377..28355274hypothetical protein
LOC_Os01g48850Os.34998.1.S1_x_at10/111+28355641..28358553auxin-responsive protein, putative, expressed
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21192.3.S1_x_at--960--6531Chr01:28339880..28339904 (25 bp)
GTTCGGCGAGCCATGGTTTTCCAAG
LOC_Os01g48820
Os.21192.3.S1_x_at--597--10291Chr01:28339897..28339921 (25 bp)
TTTCCAAGCTCTTCCGTGCGTACGG
LOC_Os01g48820
Os.21192.3.S1_x_at--66--4371Chr01:28340041..28340065 (25 bp)
CCACCAGGAGTCGTCGGCAGCAGGA
LOC_Os01g48820
Os.21192.3.S1_x_at--262--971Chr01:28340178..28340202 (25 bp)
AGGAGCCACCAGCAATCGACCGAAT
LOC_Os01g48820
Os.21192.3.S1_x_at--1131--3011Chr01:28340200..28340224 (25 bp)
AATCCGGCTCCGGTTTTGGAGGATG
LOC_Os01g48820
Os.21192.3.S1_x_at--310--7991Chr01:28340225..28340249 (25 bp)
GGATGACCTCCTCTACGACGATGAG
LOC_Os01g48820
Os.21192.3.S1_x_at--71--5351Chr01:28340279..28340303 (25 bp)
GAAGAGGACGCCACCGGAGCCCGAC
LOC_Os01g48820
Os.21192.3.S1_x_at--776--4151Chr01:28340321..28340345 (25 bp)
CGCCTCCGATCTGGGACTGGGATTG
LOC_Os01g48820
Os.21192.3.S1_x_at--679--6171Chr01:28340351..28340375 (25 bp)
GAGGAGAGGTCCACGACGCAGCAAT
LOC_Os01g48820
Os.21192.3.S1_x_at--115--3411NONE
CAGCAGCAGCATGAGTACAGCAATA
NONE
Os.21192.3.S1_x_at--482--7031Chr01:28340859..28340883 (25 bp)
GTACAGCAATAGTGCACTACAGGTA
NONE
Target Sequence 
GTTCGGCGAGCCATGGTTTTCCAAGCTCTTCCGTGCGTACGGCTACGTGCTGCCGCTGCTGCTGGCGTCCATGCTGGTGG
CCACGGGGCCCAGAGCTTTCCTCATGGCCATGGCGCTGCCGCTCGCCCAGTCCGCCATCTCCTGGGTCGTCTCCTTCTTC
ACCACCAGGAGTCGTCGGCAGCAGGAGGAGGAGGAGTCGTACGGATACGACTACGATGACGATCCCGCCTTCCAACGCCG
AGAGGAAGACGACGACGACGGCGACTACTATGATGCCGGGGCATGGCAATGGCGGAGCAGGAGCCACCAGCAATCGACCG
AATCCGGCTCCGGTTTTGGAGGATGGGATGACCTCCTCTACGACGATGAGGAGAAGAAGGAGCAGGAGAGCTCAGGGAAG
AAGAGGACGCCACCGGAGCCCGACACGGCGGCGGCTGCTGCCGCCTCCGATCTGGGACTGGGATTGCGGGCGAGGAGAGG
TCCACGACGCAGCAATGGCGGCATGTCGCGAGGAAGAAGCAGCAGCAGCATGAGTACAGCAATAGTGCACTACAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21192.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis